Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., type I site-specific deoxyribonuclease, HsdR family from Pseudomonas stutzeri RCH2

 Score =  105 bits (263), Expect = 1e-26
 Identities = 157/661 (23%), Positives = 258/661 (39%), Gaps = 108/661 (16%)

Query: 137 SANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRD 196
           S N F V  Q   +        D++ F+NG+PL  +ELKNP   Q  V+    Q +  +D
Sbjct: 119 SNNDFLVVNQFTITGTRQPRRPDLIAFVNGLPLAVVELKNPANEQTDVWDAFNQLQTYKD 178

Query: 197 ANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYL 256
               L N    LV     T  V   T  A +    LP+    N      +     +   +
Sbjct: 179 EISDLFNSNAALVVSDGWTARVGSLTANAER---MLPWRTVLNEDDRPRLQ---MELETV 232

Query: 257 WQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLV-------DHC-- 307
            +  F+ E   + ++HF+  +      + K       YHQ   VR  V        H   
Sbjct: 233 VRGFFKPELFLDYVRHFVLFEQDGDSIVKK----IAGYHQFHAVREAVRATVIASQHADK 288

Query: 308 ---SVNGVGQTY------------LIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRG 352
              +++    TY            ++ H+ GSGKS ++   A +L++   + +       
Sbjct: 289 GVLAIHEERATYAKEVKPGSRKAGVVWHTQGSGKSITMACYAGKLLQQSEMKN------- 341

Query: 353 KEMPLFDSVIVVTDRRLLDKQLRDNIKEFSE-VKNIVAPAFKSSELKSALENGKK--III 409
                  +++VVTDR  LD QL       S+ +K     A    EL+  L + +   II 
Sbjct: 342 ------PTLVVVTDRNDLDGQLFATFCAASDLLKTTPQQAGDRDELREMLASREAGGIIF 395

Query: 410 TTIQKFPYIVDGIAD--LSDR-RFAVIIDEAHSSQDGHNQDKLNEAMG---FVSEDVLDK 463
           TT+QKF    D      LSDR    VI DEAH SQ G ++ +L+   G   F     L  
Sbjct: 396 TTVQKFALQEDEEKHPLLSDRTNIVVISDEAHRSQYG-SKGRLDTKTGKYVFGYAKHLHD 454

Query: 464 ALQSAKNRKMRSNASYFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDV 523
           AL+         NA++  FT TP    LE    R+  G YV   +Y ++ A+++G  + +
Sbjct: 455 ALK---------NATFLGFTGTP--IALEDRDTREVFGDYV--SIYDIQDAVDDGATVPI 501

Query: 524 I---------ANYTTYKSYYE-IEKSIQDNPEFDSKKAQKRLRAYVE---ASQETIDTKA 570
                      N     +  E +E+ ++D  +  S++  K   A +E    S+  +   A
Sbjct: 502 FYESRLAKLDVNQAEIDTLNEQVEEVVEDEEDIVSREKTKGEWAALEKLVGSEPRLQQVA 561

Query: 571 EIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGNPFKVAIAFSGS 630
             ++EHF       +     GK M+V  + +     Y A+              ++    
Sbjct: 562 RDLIEHF-----EARVSVADGKAMIVCMSRDICAHLYNAI--------------VSLRPD 602

Query: 631 KEVDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVD--QDAYRLLVVANKYLT 688
              D  E     I        K     +   K+    +       +D  +L++V + +LT
Sbjct: 603 WHSDDPEQGAIKIVMTGSAADKALLQPHLYSKQVKKRLETRFKDVKDPLKLVIVRDMWLT 662

Query: 689 GFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDP 748
           GFD P    MY+DK +     +QA++R+NR      K      V+D+    +++K A   
Sbjct: 663 GFDAPCCHTMYIDKPMKGHNLMQAIARVNR----VFKNKPGGLVVDYIGIANELKAALKT 718

Query: 749 F 749
           +
Sbjct: 719 Y 719