Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Pseudomonas stutzeri RCH2

 Score =  515 bits (1327), Expect = e-150
 Identities = 369/1048 (35%), Positives = 541/1048 (51%), Gaps = 131/1048 (12%)

Query: 43   YLIGSPSDFDKQYALDTRLFWQFLEDTQASELEKLKRTSPHDWQRKILERFDRMIKRHGV 102
            +L+G+ S FD++ AL T     + ++      +K  + +P++    ++++  R +++ G 
Sbjct: 22   WLVGTASGFDRRTALYTEDVLGYFKEAWPERWDKFAKANPNNPDDVLVQKLVRELEQSGT 81

Query: 103  LRLLKKGLDVDDAFLSLMYPAPLASSSEKVKKDFSANLFSVTRQVCYS-----------N 151
            L +L+ G  +    + L    P    +    K +  N   V  +V YS           +
Sbjct: 82   LDVLRHGFKLPAVKVELCSFQPDHGMNPDTLKRYQCNRLRVVPEVSYSPHAREAGSSGQS 141

Query: 152  ANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDAN-------QPLLNF 204
             NP   +D+VLF+NGIP  TLELK+ +  + +V + ++QYR DR          +PLL F
Sbjct: 142  YNP--RLDLVLFVNGIPTATLELKSEF--KQSVENAKRQYRQDRPVKDPLTRKPEPLLTF 197

Query: 205  AR-CLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGF-NFGKGNPI--NPHGHKTAYLWQEV 260
             R  LVH AV  +EV MTTKLAGK+TFFLPFN G    G GNP+  +   + T YLWQ +
Sbjct: 198  KRGALVHFAVGQNEVAMTTKLAGKDTFFLPFNLGSAEGGAGNPMAEDDSQYATGYLWQRL 257

Query: 261  FRKESIANIIQHFIRL-----DGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQT 315
             + ++   ++  F+ L     DG     + K T+ FPRYHQ +VV  L++     G G+ 
Sbjct: 258  LQPDAWLKVLGRFLHLEKKTSDGFDGTPVTKETMIFPRYHQWEVVNTLINTTRAEGPGKR 317

Query: 316  YLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLR 375
            YLIQHSAGSGKSNSI W A+QL   Y    D  G R     LF+SVIV+TDR +LDKQL+
Sbjct: 318  YLIQHSAGSGKSNSIAWTAHQLASLY----DEAGQR-----LFNSVIVITDRTVLDKQLQ 368

Query: 376  DNIKEFSEVKNIV-------APAFKSSELKSALENGKKIIITTIQKFPYIVDGI---ADL 425
            D I +F   + +V       +   KS +L  AL    +III TIQ FP + D +     L
Sbjct: 369  DTIYQFEHAQGVVKQINRETSSQSKSEQLAEALAEQTRIIIVTIQTFPALFDALDKYPKL 428

Query: 426  SDRRFAVIIDEAHSSQDGHNQDKLNEAMG--------FVSEDVLDKALQSAKNRKMRSNA 477
            +  R+AVI DEAHSSQ G +  KL + +G          +E++LD A+Q+   R+     
Sbjct: 429  ASGRYAVIADEAHSSQTGSSASKLKQILGSDALEGEEISAEELLDAAVQA---RQPNERI 485

Query: 478  SYFAFTATPKNTTLEKFGQRQADGTYVP--------FHLYSMKQAIEEGFILDVIANYTT 529
            SY+AFTATPK  TLE FG R AD T  P        FHLYSM+QAIEEGFILDV+ NYTT
Sbjct: 486  SYYAFTATPKAKTLELFG-RPADPTLPPSASNKPEAFHLYSMRQAIEEGFILDVLRNYTT 544

Query: 530  YKSYYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKG 589
            Y + ++I     ++ E DSKKA+ +L  +V      I  K E+++EHF  ++     L G
Sbjct: 545  YSTAWKIAHPDGEDDEVDSKKARIKLARWVRLHPYNISQKVEVIVEHFRANIRG--LLNG 602

Query: 590  KGKGMVVTQNIESAIRYYRALTRQLNKMG-NPFKVAIAFSGSKEVDGIEYTEADINGFPE 648
            + K MVVT + + A+RY  AL   + +MG N     +AFSGS   D +          PE
Sbjct: 603  QAKAMVVTSSRQEAVRYQLALKAYVQQMGYNDVHPLVAFSGSVLPDEV---------IPE 653

Query: 649  GDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVL 708
              T+    +N      D  +    D   + +++ ANKY TGFDQPKLCAMYVDKKL  V 
Sbjct: 654  EVTESSSLLNAGLNGRD--LAHAFDTQDFNVMIAANKYQTGFDQPKLCAMYVDKKLQGVD 711

Query: 709  CVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDVNVLHELK 768
            CVQ LSRLNR+   +G  +++ F+LDFFN   DI  AF P+YT   L++ TD  ++++L+
Sbjct: 712  CVQTLSRLNRT---FG-DSKETFILDFFNEPQDILDAFLPYYTKAELTDVTDPQIIYDLQ 767

Query: 769  DDMDDTDVYEWFEVEEFNKRFFEGREAQD-----LSPIIDIAAARFNHELELEN---EFK 820
              +D   +Y W EVE F   FF+ +           P  +  A R+   +E      +FK
Sbjct: 768  KKLDAEGIYHWQEVEAFAMAFFDPKAGGSKLNYYSKPAKERFAKRYAFSVESRQQALDFK 827

Query: 821  -------------------------VD----FKVKAKQFVKIYGQIASIMPYEVVQWEKL 851
                                     VD    F+   + FV++Y  ++ I+PYE  + E+L
Sbjct: 828  RTAETNGDSAGLKKAEHALKEAGEQVDQLDLFRKNLQSFVRLYEFLSQIVPYEDRELEQL 887

Query: 852  FWFLKFLIPKLSVEDPDKEALDSLLDSVDLSSYGLQRVKLNHSIELDDSETELDPQNPNP 911
              + K L P L V+   ++ +D  +  + LS Y L + +  H + L + + +   +  + 
Sbjct: 888  CVYAKHLHPLLRVDRLLQDDVD--VGELQLSHYRLSK-RAEHQLRLSEEDGDYSLKPGSD 944

Query: 912  RGAYGP-EAEKDPLDEIIKIFNERWFQGWSATPEEQRVKFVNIAESIRNHPDFEAKYQNN 970
             G+  P + EK  L EII+  N+ +  G     E+Q      IA+ I    D  A+  N+
Sbjct: 945  VGSGKPHDPEKKRLSEIIEALNDIF--GAEVNDEDQLQFLTGIAQRISRQEDVMAQVNNH 1002

Query: 971  ADPHTRELAFEKMLKEIMLQRRKDELEL 998
            +        F K + + +L    D  +L
Sbjct: 1003 SVEQVMHGLFPKRVLDTVLDAMTDHEKL 1030