Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1027 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Xanthomonas campestris pv. campestris strain 8004

 Score =  511 bits (1315), Expect = e-148
 Identities = 364/1066 (34%), Positives = 545/1066 (51%), Gaps = 112/1066 (10%)

Query: 5    VSKTNEQALEAAIEKGLAGICKEELALGEAPLNYNNDLYLIGSPSDFDKQYALDTRLFWQ 64
            +S   E A E AIE GL                 ++  Y     +D+D+  AL       
Sbjct: 1    MSGHTEHAFETAIEVGLL----------------SSGGYHKCQSADYDEALALFPADVIG 44

Query: 65   FLEDTQASELEKLKRTSPHDWQRKILERFDRMIKRHGVLRLLKKGLDVDDAFLSLMYPAP 124
            F++ +QA+  ++L+       Q  +LE   + ++  G L +L+ G       L L Y  P
Sbjct: 45   FVKGSQATRWQQLETLLGSRTQATVLEALSKELEIKGALHVLRHGFKCYGKTLRLAYFRP 104

Query: 125  LASSSEKVKKDFSANLFSVTRQVCYSNANPLEE-------IDMVLFINGIPLITLELKNP 177
             +  + +    ++ N  ++TRQV +++     +       ID+ L +NG+P++T+ELKNP
Sbjct: 105  NSGMNPEAAAKYAHNRLTITRQVSFTSVLKRPDGKPKRCIIDVTLAVNGLPVVTVELKNP 164

Query: 178  WTGQNAVYHGQKQYRDDRDANQPLLNFA-RCLVHMAVDTDEVYMTTKLAGKNTFFLPFNK 236
             TGQ A      QY+ DRD    L  F  R LVH A+D DE +MTT+L G+ T FLPFN+
Sbjct: 165  LTGQPAS-EAIHQYQHDRDERDRLFAFKQRALVHFAIDPDEAWMTTRLKGRETVFLPFNR 223

Query: 237  GFNFGKGNPINPHGHKTAYLWQEVFRKESIANIIQHFIRLDGSSK--------KQLDKRT 288
            G   G GNP  P   KT YLW EV   +S+ +I+Q F+ L+   +        + + K T
Sbjct: 224  GDQHGAGNPPVPGNWKTHYLWDEVLNADSLLDILQRFMHLEIKERQIITDKGVRTVRKET 283

Query: 289  LFFPRYHQMDVVRRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLP 348
            + FPRYHQ+D VRRLV H   +G G  YL+QHSAGSGKSNSI W A++L   +   ++  
Sbjct: 284  MIFPRYHQLDAVRRLVGHARAHGSGHNYLVQHSAGSGKSNSIAWLAHRLASLHDAHEE-- 341

Query: 349  GSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKSS-ELKSALENGKKI 407
                    +F SV+VVTDRR+LD+QL++ I +F     +V    + + +L  AL  G  I
Sbjct: 342  -------KVFHSVVVVTDRRVLDQQLQNTIYQFEHKTGVVEKIDEDTRQLARALSGGTPI 394

Query: 408  IITTIQKFPYIVDGIA-----------DLSDRRFAVIIDEAHSSQDGH---------NQD 447
            II+TIQKFP+I   +A           D + +RFAVI+DEAHSSQ G          N+D
Sbjct: 395  IISTIQKFPFIARALARLEADGEDVKLDTAGKRFAVIVDEAHSSQSGETAMTLRGMLNRD 454

Query: 448  KLNEAMGFV----SEDVLDKA-----LQSAKNRKMRSNASYFAFTATPKNTTLEKFGQRQ 498
             +  A+        +D LD+A     L+ A+ R  + N S+FAFTATPK  T   F    
Sbjct: 455  GIEAAVAAQLSDEEDDELDEATRAAILREAQKRARQPNLSFFAFTATPKFKTKVLFDTPG 514

Query: 499  ADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDNPEFDSKKAQKRLRAY 558
              G   PFH YSM+QAIEEGFI+DV+ANYTTYK ++ + K ++++PE   K+A K L  Y
Sbjct: 515  PSGES-PFHEYSMRQAIEEGFIMDVLANYTTYKRFFGLIKQVENDPEVSRKQAAKALTRY 573

Query: 559  VEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQL-NKM 617
            +E     I+    +++EHF  HV++  +L G+ K MVVT +  +A++Y  A  R + +  
Sbjct: 574  MELHPVNIEQVVSVIVEHFRLHVMH--ELGGRAKAMVVTGSRLAAVKYKLAFDRYIKDNR 631

Query: 618  GNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAY 677
             +  +  +AFSG+ E              PE     Y +V       +S +P+  ++D Y
Sbjct: 632  YDGIRSLVAFSGTVE-------------DPEDPGASYTEVAMNDGLAESELPEAFERDDY 678

Query: 678  RLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFN 737
            R+L+VA KY TGFDQP L  MYV KKLA V  VQ LSRLNR AP  GKK     VLDF N
Sbjct: 679  RVLLVAEKYQTGFDQPLLQTMYVVKKLAGVQAVQTLSRLNRMAP--GKKR--TLVLDFVN 734

Query: 738  SVDDIKTAFDPFYTSTTLSEATDVNVLHELKDDMDDTDVYEWFEVEEF------NKRFFE 791
              +DI  AF P+Y ST + E      L EL+  +    +    +V+ F       KR   
Sbjct: 735  KEEDIHKAFKPYYESTPIGENAGPEKLSELQHKLLTPAILTPADVDAFAQAWYRPKREHS 794

Query: 792  GREAQDLSPIIDIAAARFNHELELENEFKVDFKVKAKQFVKIYGQIASIMPYEVVQWEKL 851
            G + + ++ ++D    RF  +   E E + +F+     +  +Y  ++ I+PY+    EKL
Sbjct: 795  GSDHKQMNAVLDAVVQRFKAQ---EEEKQDEFRGLLTAYRNLYAFLSQIVPYQDSDLEKL 851

Query: 852  FWFLKFLIPKLSVEDPDKEALDSLLDSVDLSSYGLQRVKLNHSIELDDSETELDPQNPNP 911
            + F++  + KL   D  K  +  L D V L  Y +Q++  + SI+L   E     + P  
Sbjct: 852  YTFVRNFMTKLPPADDGKAFV--LDDEVSLRYYRMQQL-TDGSIDLTQGEL-YSLKGPTD 907

Query: 912  RGAYGPEAEKDPLDEIIKIFNERWFQGWSATPEEQRVKFVNIAESIRNHPDF-EAKYQNN 970
             G      E   L  +++  N R+   ++   E  ++ F  I  S        EA   NN
Sbjct: 908  VGTSRVADEAVSLSSLVEKLNVRFGTDFN---EADQLFFDQIKISAEASEQIKEAAKANN 964

Query: 971  ADPHTRELAFEKMLKEIMLQRRKDELELYKLFAQDPAFKASWTQSM 1016
                T  L   ++L E+ ++R +   E++     D  F+++ ++ +
Sbjct: 965  LRDFTAYLG--RVLDELFIERMEGNEEIFSRIMTDREFRSAASEHL 1008