Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1096 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Xanthomonas campestris pv. campestris strain 8004

 Score = 90.9 bits (224), Expect = 4e-22
 Identities = 176/778 (22%), Positives = 296/778 (38%), Gaps = 176/778 (22%)

Query: 135 DFSANLFSVTRQ--VCYSNANPLEEIDMVLFINGIPLITLELKNP---WTGQNAVYHG-Q 188
           D + NL+ +T +  V  ++       D+V ++NGIPL+ +E K       G++ V     
Sbjct: 128 DAAHNLWDITEECEVLSAHGTHTRTPDIVGYVNGIPLVVIETKRADAGHAGKSMVAEAVS 187

Query: 189 KQYRDDRDANQP-LLNFARCLVHMAVDT-----------------DEVYMTTKLAGKNTF 230
           +Q R+ R    P L  +A+ LV +++                   DE +   +L      
Sbjct: 188 QQLRNQRAEEIPQLFAYAQLLVAISLTEARYGTTHTPAKFWARWRDEQFDQAQLRRLKNL 247

Query: 231 FLPFNKGFNFGKGNPINPHGHKTAYLWQE-------------VFRKESIANIIQHFIRLD 277
            LP           P     +  A LW +             +     +  +++ F+  D
Sbjct: 248 PLPAATRDALLADKPAPLRAYCQA-LWAKPMLPTEQDLLLAGLLTPARLLEVLRGFVLFD 306

Query: 278 GSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSV---NGVGQTYLIQHSAGSGKSNSITWAA 334
               K          RY Q   +R L+        +G  Q  ++ H+ GSGKS ++ +  
Sbjct: 307 RKVGK-------IVARYQQFFGIRALLAQIRTRRPDGGRQGGVLWHTTGSGKSFTMVFLT 359

Query: 335 YQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKS 394
             L+    +   L   R         V+VVTDR  L+ QL  N        + V    + 
Sbjct: 360 KALV----LDTALTQCR---------VLVVTDRTDLEAQLSRNFISGGAFGSAVGTKKEG 406

Query: 395 SELKSAL---------ENGKKIIITTIQKF------PYIVDGIADLSDRRFAVIIDEAHS 439
              K+           +  ++I  + +QKF      P   +  ADL      V++DE H 
Sbjct: 407 ERSKATTGRDLARRIGQGSERITFSLVQKFTTAAKLPECHNASADL-----IVLVDEGHR 461

Query: 440 SQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTLEKFGQRQA 499
           S  G   +++ +A+                      NA+Y AFT TP           +A
Sbjct: 462 SHGGETHERMRKAL---------------------PNAAYLAFTGTPL------LKNEKA 494

Query: 500 DGTYVPF-HLYSMKQAIEEGFI-----------LDVIANYTTYKSYYEIEKSIQDNPEFD 547
             T+ P  H Y+M++A+E+  +           L+V A   T + + +I   + D    D
Sbjct: 495 ANTFGPILHAYTMQRAVEDQTVAPLLYEERVPELEVNAAAVT-RWFDKITAGLSDAQSAD 553

Query: 548 SKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKG-KGMVVTQNIESAIRY 606
            KK     RA   A+   I+  A  +  HF       + +K  G KG + T +   AIRY
Sbjct: 554 LKKKFASKRAIYGAANR-IELIAWDIAAHF------NENIKPLGLKGQLATDSKRDAIRY 606

Query: 607 YRALTRQLNKMGNPFKVAIAFS------GSKEVDGIEYTEADINGFPEGDTKDYFDVNYK 660
            RAL       G     A+  S      G+ +VD     E     + +  T    D    
Sbjct: 607 KRALDETGLVTG-----AVVISPPDTREGNSDVDEDTLPEVQ-KWWKQAITDQRLDPQEY 660

Query: 661 RKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNR-- 718
            ++         D D   LL+V +K LTGFD+P+   +Y+DK L     +QA++R+NR  
Sbjct: 661 ERQTVRDFGGDGDPD---LLIVVDKLLTGFDEPRNAVLYIDKPLKGHNLIQAVARVNRLH 717

Query: 719 SAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLS----EATDVNVLHELKDDMDDT 774
            A +YG       ++D+   + ++ TA   +    T +    +  D+  L++        
Sbjct: 718 DAKRYG------ILVDYRGILTELDTAVRAYQDLETRTQGGFDVADIEGLYQAIST---- 767

Query: 775 DVYEWFEVEEFNKR---FFEGREAQD--------LSP--IIDIAAARFNHELELENEF 819
              E+  +   N R   FF+G  + D        LSP  + D   A ++   +L ++F
Sbjct: 768 ---EYRRLPALNARLWAFFDGLASHDDPEQFRQRLSPRFVADEEGADYDERQKLRDDF 822