Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1059 a.a., type I restriction endonuclease subunit R from Synechocystis sp000284455 PCC 6803

 Score =  105 bits (263), Expect = 1e-26
 Identities = 167/726 (23%), Positives = 285/726 (39%), Gaps = 148/726 (20%)

Query: 150 SNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQK---QYRDDRDANQP-----L 201
           SN       D+VLF+NGIPL+ +E K+P T QN +    +   +Y + R++ QP     L
Sbjct: 147 SNGKHFSIPDIVLFVNGIPLVVMECKSP-TLQNPLTDAIEDLLKYSNQRNSEQPEGIEKL 205

Query: 202 LNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYLWQEVF 261
            ++   +V M+ +   V     +  K+  +L +   +      P  P      +  +++ 
Sbjct: 206 FHYNLMMVAMSQNRAVV---GAVCAKHDEYLAWKDVY------PATPESIAQIFAVEKLI 256

Query: 262 --RKESIANIIQHFIRLD-----GSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQ 314
             R+  +A +++  I LD             K     PRY Q   + + +D    N   Q
Sbjct: 257 GDRQTLVAGLLKPDIVLDVLRNFTMFSTHTGKLEKVLPRYLQYRAILKAIDRLQNNSTRQ 316

Query: 315 TY-------LIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDR 367
            +       ++ H+ GSGKS S+ +   ++             R   +  F  +++VTDR
Sbjct: 317 DHSDDRRGGIVWHTQGSGKSLSMVYLIRKI------------RRTPNLKRF-KIVIVTDR 363

Query: 368 RLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALENGKKIIITTIQKF-----------P 416
             L+KQL   +K   E   I A   K  E   A + G  ++   +QKF            
Sbjct: 364 TDLEKQLSATVKLTKEPLQI-AKNVKQLEHYLA-QPGAGLVFGMVQKFRGEDEEPQDIEE 421

Query: 417 YIVDGIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSN 476
           YI + + D  +    V+IDEAH S        L +A+                      N
Sbjct: 422 YIPEHLNDSPE--ILVMIDEAHRSHASALHMNLMKAL---------------------PN 458

Query: 477 ASYFAFTATP-----KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDV-------- 523
            +   FT TP     K  T E FG             Y++K++ E+G  L +        
Sbjct: 459 CAKIGFTGTPIVAAKKKKTAEIFGGW--------IDKYTIKESQEDGVTLRIMYEGLEAR 510

Query: 524 --IANYTTYKSYYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHV 581
             +AN  T    +E+    +   E    K +   R  V  ++E I  KA+ ML+H+I+H+
Sbjct: 511 ATVANGETLDQLFEVIFRDKSEEERGKIKQKYATRGEVGEAKELIVAKAKDMLQHYIRHI 570

Query: 582 VNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGNPFKVAIAFSGSKEVDGIEYTEA 641
                L    K  VV  +  +AIRY+ A +  L ++    +   A   S + + I   + 
Sbjct: 571 -----LPNGFKAQVVASSRRAAIRYHEAFSLALQEVIQKVENQRAILQSLDDEAIASLDQ 625

Query: 642 DINGFP------------------EGDTKDYFDVNYKRKEPDSP-----IPKHVDQDAYR 678
           +                        GD +D  D      + +         K + +D   
Sbjct: 626 ETQYLAYCSRHLEILRTLETAVVISGDKEDPQDWQCWTSQSNQDQFIERFKKPLAEDGLA 685

Query: 679 LLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFV------ 732
            L+V +  LTGF+ P   AMY+D+ +     +QA++R+NR+   Y  K   L V      
Sbjct: 686 FLIVKSMLLTGFNAPIEQAMYIDRNMVEHELLQAIARVNRT---YDGKDYGLIVDYHGIR 742

Query: 733 LDFFNSVDDIKTAFDP-FYTSTTLSEATD-----VNVLHELKDDMDDTDV-YEWFEVEEF 785
           +D   ++ D++   D  F  ST L +  D     +++  E + D+ D +   +  + E  
Sbjct: 743 IDEALAMYDVEDLIDSHFDISTELPKLEDQCRRVLSIFEESQTDISDVEACLQLLDDERL 802

Query: 786 NKRFFE 791
             +F E
Sbjct: 803 RVQFIE 808