Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1039 a.a., DEAD/DEAH box helicase-like from Synechococcus elongatus PCC 7942

 Score =  447 bits (1149), Expect = e-129
 Identities = 332/949 (34%), Positives = 493/949 (51%), Gaps = 123/949 (12%)

Query: 13  LEAAIEKGLAGICKEELALGEAPLNYNNDLYLIGSPSDFDKQYALDTRLFWQFLEDTQAS 72
           LE+A E   A IC++        L     +Y  G+ +D+D+  AL     + +L+ TQ  
Sbjct: 5   LESAFE---AEICQD--------LAQQGWIYEEGAAADYDRALALYPPDLFAWLQQTQPE 53

Query: 73  ELEKLKRTSPHDWQRKILERFDRMIKRHGVLRLLKKGLDVDDA--FLSLMYPAPLASSSE 130
             E L++      +  +L+R  + + + G L LL+ GL+V      L L    P  +++ 
Sbjct: 54  AWETLQQKQGTQAEAILLQRVRQQLDQVGTLDLLRYGLEVLGLPRSLKLAQFKPAFATNA 113

Query: 131 KVKKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQ--NAVYHGQ 188
           +++  + AN   V RQV YS  N    ID+VLF+NGIP+ T+ELK   T    +AVY   
Sbjct: 114 EIRDRYEANRLRVIRQVRYSLHNQ-NCIDLVLFLNGIPVATVELKTDNTQNIADAVYQ-Y 171

Query: 189 KQYRDDRDANQ---PLLNF-ARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFN----- 239
           KQ R+ + A Q   PLL+F +  +VH AV   EV MTTKLAG  T FLPFN+G +     
Sbjct: 172 KQDRNPKPAGQSPEPLLSFPSGAIVHFAVSNREVQMTTKLAGFATVFLPFNQGSDPGAPD 231

Query: 240 FGKGNPINP-HGHKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMD 298
            G GNP++   GH+TAYLWQEV++++S   I+  +   + + K+Q+ +  L FPRYHQ+ 
Sbjct: 232 CGAGNPVSSASGHRTAYLWQEVWQRDSWLEILGRYCITERNKKQQITR--LLFPRYHQLI 289

Query: 299 VVRRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLF 358
           V RRL +     G G  YL+QHSAGSGK+NSI W A+   E +   +           +F
Sbjct: 290 VTRRLQEAVLQEGAGHKYLVQHSAGSGKTNSIAWTAHFFSELHDADN---------RKVF 340

Query: 359 DSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAP-----AFKSSELKSALENGKKIIITTIQ 413
           DSVIVV+DR ++D QL++ I+ F   K +VA        KSS+L  AL+  KKI++ TIQ
Sbjct: 341 DSVIVVSDRNVIDTQLQEAIESFERHKGVVAAITRDDGSKSSKLAEALKGDKKIVVCTIQ 400

Query: 414 KFPYIVDGIADLS---DRRFAVIIDEAHSSQDGHNQDKLNEAMGFVS-EDVLD------K 463
            FP+ +  + +L+    +RFAVI DEAHSSQ G    KL + +      D+ D      +
Sbjct: 401 TFPFALQAVRELAATEGKRFAVIADEAHSSQTGEAASKLKQLLSPAELADLNDGGEVDLE 460

Query: 464 ALQSAK--NRKMRSNASYFAFTATPKNTTLEKFGQRQ-------ADGTYVPFHLYSMKQA 514
           A+ +A+  +R   S  +Y AFTATPK  TLE FG+R         D   +PFH+YSM+QA
Sbjct: 461 AVLAAQMSDRARESGITYVAFTATPKAKTLELFGRRPDPNRPAGPDNLPMPFHVYSMRQA 520

Query: 515 IEEGFILDVIANYTTYKSYYEIEKSIQD--NPEFDSKKAQKRLRAYVEASQETIDTKAEI 572
           IEEGFILDV+ NYT+YK  + + ++ Q   + E +   A K+L  +V+     I  K  I
Sbjct: 521 IEEGFILDVLQNYTSYKVAFRLAQAGQQFSDQEVERNAALKKLMGWVKLHPHNIAQKVAI 580

Query: 573 MLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGNPFKVAIAFSGSKE 632
           ++EHF ++V     L GK K MVV  + + A+R+  A+ R +          +AFSG   
Sbjct: 581 VVEHFQQYVA--PLLNGKAKAMVVVGSRKEAVRWKLAIDRYIAAKQYRLGTLVAFSGEVR 638

Query: 633 -----VDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYL 687
                 D    T  ++N   +GD ++ F                   D Y++L+VANK+ 
Sbjct: 639 DRDSGPDPFTETSPNLNPNLQGDIRETFK-----------------SDRYQILIVANKFQ 681

Query: 688 TGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFD 747
           TGFDQP LC MY+D++LA +  VQ LSRLNR  P  GK T   +++DF N   +I  AF 
Sbjct: 682 TGFDQPLLCGMYIDRRLAGIQAVQTLSRLNRCHP--GKDT--TYIVDFSNDPAEILAAFK 737

Query: 748 PFYTSTTLSEATDVNVLHELKDDMDDTDVYEWFEVEEFNKRFFEGREAQ-DLSPIIDIAA 806
            +YT+  L+ ATD N++ +L+  +D    Y+ +E++   K        Q DL   ++  A
Sbjct: 738 TYYTTAELASATDPNLILDLRLKLDAQKHYDAYEIDRVVKVVLNPNAKQSDLQKALEPIA 797

Query: 807 ARFNHE----------LELENE------------FKVDFKVKAKQFVKIYGQIASIMPYE 844
            R  ++           E +N+                F+     +V++Y  ++ I  Y 
Sbjct: 798 ERLLYQYRNARQAARTAEAQNDPAALKTAQDELAALTLFRSDLGTYVRLYTFLSQIFDYG 857

Query: 845 VVQWEKLFWFLKFLIPKLSVEDPDKEALDSLLDSVDLSSYGLQRVKLNH 893
              +EK     + LIP L  E          + S+DLS   L   ++ H
Sbjct: 858 NTAYEKRAIVFRRLIPLLEFERE--------VGSIDLSKVVLTHYQVRH 898