Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1065 a.a., type I restriction enzyme R protein from Sinorhizobium meliloti 1021

 Score = 99.4 bits (246), Expect = 1e-24
 Identities = 164/686 (23%), Positives = 280/686 (40%), Gaps = 141/686 (20%)

Query: 96  MIKRHGVLRLLKKGLDV----DDAFLSLMYPAPLASSSEKVK----KDFSANLFSVTRQV 147
           M     VL L++ G+DV    DD  ++           E+V+    +D  AN F++  QV
Sbjct: 105 MAANREVLELVRDGVDVEYRDDDGGMA----------KERVRVIDWRDLGANEFTLISQV 154

Query: 148 CYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDD-RDANQPLLNFAR 206
             S        D++ F+NG+PL+ +ELK    G   +   +  YRD+ RD    +    R
Sbjct: 155 WISGELHRRRTDLIGFVNGVPLLFIELK---AGHRRI---EDAYRDNVRDYRDSIPQLFR 208

Query: 207 CLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGH---KTAYLWQEVFRK 263
               + V      + T++    + + P++    + + +     G    +TA   +     
Sbjct: 209 PNGFVLVSNG---LDTRIGA--SAYSPWDTYKEWKRIDDETEPGRVSLETAI--RAAATP 261

Query: 264 ESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGV--GQTYLIQHS 321
           E + +++++F+  +  +K  L K+     + HQ   V + V      G   G+  +  H+
Sbjct: 262 ERLIDLVENFLIFE-ETKDGLVKK---IAQNHQFLGVNKAVQAVVNLGENRGKLGVFWHT 317

Query: 322 AGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEF 381
            GSGKS S+      L  T  +   +PGS         + ++VTDR  LDKQ+ D     
Sbjct: 318 QGSGKSLSM------LTFTRKVLRAIPGSW--------TFVIVTDREELDKQISDVFAAC 363

Query: 382 SEVKNIVAPAFKSSE--LKSALENGKKIIITTIQKFPYIV-DGIADLSDRRFAVII-DEA 437
             V   V      S+  LK+ L   ++ + T I KF     +    LS+R   ++I DEA
Sbjct: 364 GAVTKDVREVRAGSKEHLKTLLRGNERYVFTLIHKFGTAKGETFPVLSERSDIIVIADEA 423

Query: 438 HSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTLEKFGQR 497
           H SQ                 D L     +A  R+   NA++  FT TP     EK   R
Sbjct: 424 HRSQ----------------YDTL-----AANMRRALPNAAFIGFTGTPLMAGEEK--TR 460

Query: 498 QADGTYVPFHLYSMKQAIEEGFILDVI-------ANYTTYKSYYEIEKSIQ--DNPEFDS 548
              G YV  + Y  +Q+ E+G  + +          +       ++E  I+  D  E   
Sbjct: 461 DVFGDYVSTYTY--QQSTEDGATVPLYYENRIPELEFANESFAEDLEAVIEEADLDEEQE 518

Query: 549 KKAQKRL--RAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRY 606
           ++ +KRL  + ++   ++ +D  AE ++ HF+           +GK M V  +  +A+R 
Sbjct: 519 RELEKRLGTQYHLITREDRLDRIAEDLVRHFVGRGY-------RGKAMFVAIDKATAVRM 571

Query: 607 Y--------RALTRQLNKMGNP-------FKVAIAF-----------SGSKEVDGIEYTE 640
           Y          + R++  +G+            IAF            G  E+  +E   
Sbjct: 572 YDKVRRAWDAEIARRVAALGSAPADQREAQAAVIAFMRETDMAVVVSQGQNEIADMEAKG 631

Query: 641 ADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYV 700
            DI        ++  D  +K+             D  RL+ V   ++TGFD P    +Y+
Sbjct: 632 LDIRAHRRRMIEEDLDERFKK-----------GSDPLRLVFVCAMWITGFDVPTCSTIYL 680

Query: 701 DKKLASVLCVQALSRLNRSAPKYGKK 726
           DK + +   +Q ++R NR+AP  GKK
Sbjct: 681 DKPMKNHTLMQTIARANRNAP--GKK 704