Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 942 a.a., type I restriction endonuclease subunit R from Parabacteroides merdae CL09T00C40

 Score = 99.4 bits (246), Expect = 1e-24
 Identities = 146/631 (23%), Positives = 229/631 (36%), Gaps = 153/631 (24%)

Query: 133 KKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYR 192
           ++ +  N F V+ Q+           D+ + ING+PL+ +ELK         Y+  ++Y 
Sbjct: 102 RQQWCQNEFQVSNQITVEGRKKCR-YDVTILINGLPLVQIELKRRGVELKQAYNQIQRYH 160

Query: 193 DDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNF------GKGNPI 246
                        +   H   D  ++++ +       F    N G+ F         +P 
Sbjct: 161 -------------KTSFHGLFDYIQLFVISNGVNTRYFANNPNSGYKFTFNWTDAANHPF 207

Query: 247 NPHGHKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDH 306
           N       +       K ++  II  +I L    K       L   R +Q   V +++D 
Sbjct: 208 NELDKFAVFF----LEKCTLGKIIGKYIVLHEGDK------CLMVLRPYQFYAVEKILDR 257

Query: 307 CSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTD 366
             V        I H+ G+GK+ + ++ A QL+               E+   D V+ V D
Sbjct: 258 --VQNSNDNGYIWHTTGAGKTLT-SFKAAQLV--------------SELDDVDKVMFVVD 300

Query: 367 RRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALENGKKIIITTIQKFPYIV------D 420
           R  LD Q +   + F      V     + EL   L++  KIIITTIQK    V      +
Sbjct: 301 RHDLDTQTQSEYEAFE--PGAVDSTDNTDELVKRLQSNSKIIITTIQKLNSAVSKTWYSN 358

Query: 421 GIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYF 480
            I  +   R  +I DE H S  G +  K+                      K   NA  F
Sbjct: 359 KIESVRHSRIVMIFDECHRSHFGDSHKKI---------------------MKFFDNARIF 397

Query: 481 AFTATP--------KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKS 532
            FT TP         +TT E FG           H Y +K AI +  +L  +  Y     
Sbjct: 398 GFTGTPIFTENAVDGHTTKEIFGN--------CLHKYLIKDAIADENVLGFLVEY----- 444

Query: 533 YYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGK 592
           Y+  E    DN                   Q  ++  A+ +L +F     N     G+  
Sbjct: 445 YHGNEVVDNDN-------------------QARMEEIAKFILNNF-----NKSTFDGEFD 480

Query: 593 GMVVTQNIESAIRYYRALTRQLN---KMGNPFKVAIAFSGSKEVDGI---EYTEADI--- 643
            +   Q++   IRYY+ + + LN   ++G  F  A   S   +  G+   +YT   +   
Sbjct: 481 ALFAVQSVPMLIRYYK-IFKSLNPKIRIGAVFTYAANSSQDDDQTGMGTGQYTSQSVGEA 539

Query: 644 ---------------NGFPEGDTKDYF-DVNYKRKEPDSPIPKHVDQDAYRLLVVANKYL 687
                            F   + + Y+ D+N + K+      K  D     L +V   +L
Sbjct: 540 DELQAIMDDYNKMYGTAFTTENFRAYYDDINLRMKK------KKTDMKPLDLCLVVGMFL 593

Query: 688 TGFDQPKLCAMYVDKKLASVLCVQALSRLNR 718
           TGFD  KL  +YVDK +     +QA SR NR
Sbjct: 594 TGFDSKKLNTLYVDKNMEYHGLLQAFSRTNR 624