Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1088 a.a., putative type I restriction-modification system, R subunit from Phaeobacter inhibens DSM 17395

 Score = 84.7 bits (208), Expect = 3e-20
 Identities = 163/715 (22%), Positives = 276/715 (38%), Gaps = 174/715 (24%)

Query: 135 DFSANLFSVTRQVCYSNANPLEEI-------DMVLFINGIPLITLELKNPW--------T 179
           D +AN F+V+ Q    +  P  ++       D+V+ +NGIP++ +E K+P          
Sbjct: 123 DVAANSFTVSNQFRV-DCPPGHDVGKGFIIPDVVMLVNGIPMVVVEAKSPGIPEPLAEAV 181

Query: 180 GQNAVYHGQKQYRDDRDANQ--PLLNFARCLVHMAVDTDEVYMTTKLAGK------NTFF 231
            Q   YH  ++   + D N+  P L FA   + +A   DE  +    AG        T  
Sbjct: 182 KQLRRYHNARKAALEVDENEGAPAL-FASVQLLIATSFDEARVGCIGAGLEYYGQWKTVV 240

Query: 232 LPFNKGFNFGKGNPINPHGHKTAYLWQE-----VFRKESIANIIQH---FIRLDGSSKKQ 283
            P  KG        +     KT    QE     + R   + +I++H   F+ + G + K 
Sbjct: 241 GPDGKGSEDEVAKALG----KTRLSEQERMIAGMLRPAHLLDILRHYLLFMNVGGQTIKT 296

Query: 284 LDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQTY-----------LIQHSAGSGKSNSITW 332
           +        RY Q   V R ++       G+T            ++ H+ GSGKS ++ +
Sbjct: 297 V-------CRYQQYRAVNRALERLR---TGKTRVQDGEYDRRGGIVWHTQGSGKSLTMVF 346

Query: 333 AAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAF 392
              ++        DL   + K       VI+VTDR+ L +QL +      +V   V  A 
Sbjct: 347 MIRKM------RTDLDLRKFK-------VIMVTDRKDLQRQLSETATMSGDV---VELAI 390

Query: 393 KSSELKS-ALENGKKIIITTIQKFPYIVDGIADLS----------DRRFAVIIDEAHSSQ 441
            +S LK  A   G  ++  TIQK+    D +A+++          D    V++DEAH +Q
Sbjct: 391 SNSSLKRLARRKGPGLVFATIQKYRTDED-VAEVTKGPAFDVLNEDDTILVVVDEAHRTQ 449

Query: 442 DGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATP-----KNTTLEKFG- 495
            G     L  A+                      N +   FT TP     K  + E FG 
Sbjct: 450 AGDLHANLLAAL---------------------PNCARIGFTGTPIIMGEKKRSTEIFGD 488

Query: 496 --------QRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDNPEFD 547
                   + +ADG  VP  LY  + A  EG + D      T    +E     + + E +
Sbjct: 489 FIDQYTIKEAEADGATVPV-LYEGRTA--EGAVKD----GATLDGLFEDMFRGRSDEELE 541

Query: 548 SKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYY 607
           + + +   +  +  ++E I  KA  ML H++ ++     L    K  VV  +  + +RY+
Sbjct: 542 AIRKKYATKGNILEAKELIGEKARDMLRHYVTNL-----LPNGYKAQVVAYSRTAVVRYH 596

Query: 608 RALTRQLNKM--------------------GNPFKVAIAFSGSKEVDGIEYTEADINGFP 647
            A     +++                      P K+       +  D +E  + +     
Sbjct: 597 AAFLEARDELLAEAAALPDCDKSLDDEELCIRPAKLQALVQAWRYRDTLE--KIEFAAIM 654

Query: 648 EGDTKDYFDVNYKRKEPDSPIPKHVDQ-------------DAYRLLVVANKYLTGFDQPK 694
            G   D  D ++K+    S     + +             D    L+V +  LTGFD P 
Sbjct: 655 SGGNND--DASWKQWTESSAQEMRIKRFKKPLFHNDSTKADPLAFLIVKSMLLTGFDAPI 712

Query: 695 LCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPF 749
              MY+D+ +     +QA++R+NR+   +GK      V+D+F     +K+A   +
Sbjct: 713 EGVMYLDRSIREAELLQAIARVNRTG--FGKTCG--IVVDYFGVAHHLKSALSAY 763