Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1032 a.a., type I restriction endonuclease subunit R from Methanococcus maripaludis JJ

 Score =  117 bits (294), Expect = 3e-30
 Identities = 185/776 (23%), Positives = 318/776 (40%), Gaps = 137/776 (17%)

Query: 76  KLKRTSPHDWQRKIL--ERFDRMIKRHGVLRLLKKGLDVDDAFLSLMYPAPLASSSEKV- 132
           K+   +  D  RK+L  E  + ++        + KG+DV+       YP       +KV 
Sbjct: 61  KVPEVAREDALRKVLRLENPNLLMNNEKFHEFIFKGIDVE-------YPIDGRVKGDKVY 113

Query: 133 --KKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQ 190
              K+   N F    Q      N     D+V+F+NG+PL  +ELKNP      ++    Q
Sbjct: 114 LLDKNPLKNEFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQ 173

Query: 191 YRDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHG 250
            +  +     L  +   +  +  D  E  + T L+    +FLP+    +    + IN   
Sbjct: 174 IQTYKSEISELFKYNELI--LISDGTESRIGT-LSSNKEWFLPWK---SIDGTSEINNGV 227

Query: 251 HKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHC--S 308
            +       +F K    +II++FI      K  +         YHQ     R ++    +
Sbjct: 228 SQLKISILGMFDKTRFIDIIKNFIVFKKDGKDIIK----VIAGYHQYFAANRAIEKTIEA 283

Query: 309 VNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRR 368
           V+G  +  ++ H+ GSGKS ++ + A +L  T  + +              +++VVTDR 
Sbjct: 284 VSGNRRCGVVWHTQGSGKSLTMAFYAGKLAITPELRNP-------------TIVVVTDRN 330

Query: 369 LLDKQLRDNIKEFSEV-KNIVAPAFKSSELKSALEN-GKKIIITTIQKFPYIVDGIAD-- 424
            LD QL        +V K     A  + +LK  L+     +I TT+QKF   VD +    
Sbjct: 331 DLDDQLFGTFASCIDVLKQTPVQAKNAEDLKEQLQVVSGGVIFTTMQKFS--VDELNAKY 388

Query: 425 --LSDRRFAVII-DEAHSSQDG------HNQDKLNEAMGFVSEDVLDKALQSAKNRKMRS 475
             LSDR   +++ DEAH SQ G          ++    GF       K L+ A       
Sbjct: 389 PMLSDRENIIVMADEAHRSQYGLKARSVEKNGEVGITYGFA------KYLRDAL-----P 437

Query: 476 NASYFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYYE 535
           NAS+  FT TP +   E    R   G Y+   +Y +++A+ +G          T K YYE
Sbjct: 438 NASFIGFTGTPID--FEDKSTRSIFGEYID--IYDVRRAVADG---------RTVKIYYE 484

Query: 536 ---------------IEKSIQDNPEFDSKKAQKRLR---AYVEA---SQETIDTKAEIML 574
                          ++   ++  EF+    +++L+   A +EA   S + I   A+ ++
Sbjct: 485 SRVAKIGIENDVLAKLDAEFEEVTEFEENYKKEKLKGKWAQLEAIVGSSDRISKVAQDIV 544

Query: 575 EHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGNPFK----VAIAFSGS 630
            HF K     ++    GK +VV  +    +  Y  + R      N       + +  +GS
Sbjct: 545 NHFEK-----REETLSGKAIVVCMSRRICVDLYDEIIRLRPDWHNDDDKLGVLKVIMTGS 599

Query: 631 KEVDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGF 690
              DG E+ +   +     +  ++F      K P+S          +++ +V + +LTGF
Sbjct: 600 A-ADGTEWQKHIRSKGKRKELAEHF------KNPESE---------FKIAIVRDMWLTGF 643

Query: 691 DQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFY 750
           D P L  +Y+DK +     +QA++R+NR    +  K   L V+D+     D+K A   + 
Sbjct: 644 DVPCLHTLYIDKPMKGHGLMQAIARVNR---VFRDKPGGL-VVDYIGIAQDLKYALMNYT 699

Query: 751 TSTTLSEAT-----DVNVLHELKDDMDDTDVYEWFEVEEFNKRFFEGREAQDLSPI 801
           +S    + T      VN++    + M D     +F   +++K FF G   + +  I
Sbjct: 700 SSGGTGKPTYDIEDAVNLMKSKYEAMKD-----FFYGHDYSK-FFNGTNIEKMDVI 749