Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1009 a.a., type III restriction enzyme, res subunit from Marinobacter adhaerens HP15

 Score = 1544 bits (3997), Expect = 0.0
 Identities = 764/1024 (74%), Positives = 874/1024 (85%), Gaps = 24/1024 (2%)

Query: 4    MVSKTNEQALEAAIEKGLAGICKEELA----LGEAPLN--YNNDLYLIGSPSDFDKQYAL 57
            MVS+TNEQALEAAIE+ L G+  E +     + E P +    N+ + +G P DF+ QYA+
Sbjct: 1    MVSQTNEQALEAAIERALTGLTTEAVKQAGKVKETPADDLVANNGFQLGLPYDFNAQYAI 60

Query: 58   DTRLFWQFLEDTQASELEKLKRTSPHDWQRKILERFDRMIKRHGVLRLLKKGLDVDDAFL 117
            D +LFW+FLE TQ  EL KLK+ +  DW RK+LER+DR+IK+HG+L LLKKGL VDDA  
Sbjct: 61   DEKLFWRFLEQTQGKELAKLKKHNSTDWDRKLLERYDRLIKKHGILHLLKKGLAVDDAHF 120

Query: 118  SLMYPAPLASSSEKVKKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNP 177
             LMYPAPLASSSEKVK++++AN+FS TRQV YS ANPL+EIDMVLF+NGIPL+T+ELKN 
Sbjct: 121  HLMYPAPLASSSEKVKQNYAANIFSCTRQVRYSLANPLQEIDMVLFLNGIPLVTMELKNA 180

Query: 178  WTGQNAVYHGQKQYRDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKG 237
            WTGQ A YHGQKQYR++RD NQPLLNFARCLVHMAVDTDEVYMTTKL GK+TFFLPFNKG
Sbjct: 181  WTGQTARYHGQKQYRENRDTNQPLLNFARCLVHMAVDTDEVYMTTKLNGKSTFFLPFNKG 240

Query: 238  FNFGKGNPINPHGHKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQM 297
             N GKGNP NPHGHK++YLW+EVF K+S+ NIIQHF+RLDGSSK  L KRTLFFPRYHQM
Sbjct: 241  HNHGKGNPPNPHGHKSSYLWEEVFTKDSLVNIIQHFVRLDGSSKDPLRKRTLFFPRYHQM 300

Query: 298  DVVRRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPL 357
            DVVR+LV H   +GVG TYLIQHSAGSGKSNSITWAAYQLIETYP +D   G + ++ PL
Sbjct: 301  DVVRKLVAHAEDHGVGHTYLIQHSAGSGKSNSITWAAYQLIETYPKNDAAAGGKDQDQPL 360

Query: 358  FDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALENGKKIIITTIQKFPY 417
            FDSVIVVTDRRLLDKQ+R+NIKEFSEVKNIVAPAFKSSELKSALE+GKKIIITTIQKFP+
Sbjct: 361  FDSVIVVTDRRLLDKQIRENIKEFSEVKNIVAPAFKSSELKSALESGKKIIITTIQKFPF 420

Query: 418  IVDGIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFV-SEDVLDKALQSAKNRKMRSN 476
            IV+GI DL D+RFAVIIDEAHSSQ G   D +N AMG    ED  DK L++ ++RKMR N
Sbjct: 421  IVEGIEDLGDKRFAVIIDEAHSSQSGSAHDNMNRAMGQEDDEDEQDKILKAMRSRKMRGN 480

Query: 477  ASYFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYYEI 536
            ASY AFTATPKNTT EKFG++Q DGT+  FHLYSMKQAIEEGFILDV+ANYTTYKSYYEI
Sbjct: 481  ASYMAFTATPKNTTFEKFGEKQDDGTFREFHLYSMKQAIEEGFILDVLANYTTYKSYYEI 540

Query: 537  EKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVV 596
            EKSI +NP+FD+KKAQK+LRAYVE+SQ+TI+TKAEIMLEHFI  VVN KKLKGK KGMVV
Sbjct: 541  EKSIAENPQFDTKKAQKKLRAYVESSQQTINTKAEIMLEHFIPQVVNTKKLKGKAKGMVV 600

Query: 597  TQNIESAIRYYRALTRQLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTKDYFD 656
            TQNIE+AIRY+RA++R L K GNPFK  +AFSG+KEVDGIEYTEADINGF E DTKD FD
Sbjct: 601  TQNIETAIRYHRAISRILEKNGNPFKALVAFSGTKEVDGIEYTEADINGFSENDTKDKFD 660

Query: 657  VNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRL 716
                              D YRLLVVANKYLTGFDQPKLCAMYVDKKLASV+CVQ LSRL
Sbjct: 661  T-----------------DEYRLLVVANKYLTGFDQPKLCAMYVDKKLASVMCVQTLSRL 703

Query: 717  NRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDVNVLHELKDDMDDTDV 776
            NR+APK GKKTEDLF+LDFFN+ DDIKTAFDPFYT+T+LS ATDVNVLHELKD MD+  V
Sbjct: 704  NRAAPKLGKKTEDLFILDFFNTTDDIKTAFDPFYTATSLSGATDVNVLHELKDAMDEVGV 763

Query: 777  YEWFEVEEFNKRFFEGREAQDLSPIIDIAAARFNHELELENEFKVDFKVKAKQFVKIYGQ 836
            YEW EVE+F  R+F+G +AQ+LSPIID+AA+RF HELELE++ KVDFK+KAKQ+VKIYGQ
Sbjct: 764  YEWHEVEDFVARYFDGEDAQNLSPIIDVAASRFEHELELEDDDKVDFKIKAKQYVKIYGQ 823

Query: 837  IASIMPYEVVQWEKLFWFLKFLIPKLSVEDPDKEALDSLLDSVDLSSYGLQRVKLNHSIE 896
            +A+IMPYE+V WEKLFWFLKFLIPKL V+DPD +A+D LL+SVDLSSYGLQRVKLNHSI 
Sbjct: 824  MAAIMPYEIVAWEKLFWFLKFLIPKLKVKDPDTDAIDELLESVDLSSYGLQRVKLNHSIS 883

Query: 897  LDDSETELDPQNPNPRGAYGPEAEKDPLDEIIKIFNERWFQGWSATPEEQRVKFVNIAES 956
            LD+ E+ +DPQNPNPRGA G   ++DPLDEI++ FNERWFQGW+ATPEEQ+VKFVNIAES
Sbjct: 884  LDEEESGVDPQNPNPRGALGDGPQEDPLDEIVRTFNERWFQGWTATPEEQKVKFVNIAES 943

Query: 957  IRNHPDFEAKYQNNADPHTRELAFEKMLKEIMLQRRKDELELYKLFAQDPAFKASWTQSM 1016
            IR HPDFEAKYQNN DPH RELAFEKMLKE+ML+RRKDELELYK+FA D AFK +W QSM
Sbjct: 944  IRQHPDFEAKYQNNPDPHNRELAFEKMLKEVMLRRRKDELELYKMFAGDAAFKTAWMQSM 1003

Query: 1017 QRMV 1020
            QRMV
Sbjct: 1004 QRMV 1007