Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1033 a.a., type I restriction-modification system, R subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.8 bits (216), Expect = 4e-21
 Identities = 165/766 (21%), Positives = 300/766 (39%), Gaps = 167/766 (21%)

Query: 135 DFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRD- 193
           + +AN F  T Q      N     D+V FING+PL  +E K+P+     +  G  Q R  
Sbjct: 117 NLAANEFICTSQFKVEGVNQNIIPDIVCFINGLPLAVIECKSPYISA-PISEGINQLRRY 175

Query: 194 -------DRDANQPLLNFARCLVHMAVDTDEV------------------YMTTKLAGKN 228
                  D +  Q L  + + +V    D  +V                  +  T L+ +N
Sbjct: 176 ANLRNSVDDEGAQRLFWYNQLMVSTCRDQAKVGTISSNASHYADWKDAYPFTDTTLSEQN 235

Query: 229 TFFLPFNKGFNFGKGNPINPHGHKTAY------------------LWQEVFRKESIANII 270
                 ++ F+    + +  + +   Y                  L   +F   S  +I+
Sbjct: 236 -----LSQAFSRNSLDDMQVNDNPALYTATSSNYDAITAVTAQQRLIAGIFSPASFLDIL 290

Query: 271 QHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSV--NGVGQTYLIQHSAGSGKSN 328
           Q+FI  +    K + K      RY Q   V ++++      +   ++ ++ H+ GSGKS 
Sbjct: 291 QNFIIFEPVEGKLIKK----VARYQQYRAVNKVIERLKTGQDRKEKSGVVWHTQGSGKSL 346

Query: 329 SITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIV 388
           ++   A ++    P+                 ++ +TDR  LD+QL    +  +     +
Sbjct: 347 TMVMLAVKMRRD-PVLKQY------------KLVFITDRTQLDEQLSSTFR--AAQGETI 391

Query: 389 APAFKSSELKSALENGKKIIITT-IQKFPYIV---------DGIADLSDR-RFAVIIDEA 437
             A   +ELK+ L+     ++T  +QKF  +          +G  +L+   +  V+ DEA
Sbjct: 392 YNAGSVAELKALLKKDSSDLVTAMVQKFLDLEKELSTNNENEGFINLNPSDKIIVLADEA 451

Query: 438 HSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTLEKFGQR 497
           H +Q G     +N A+                      NA    FT TP   T +     
Sbjct: 452 HRTQFGGLAMTINAAL---------------------PNAPKIGFTGTPLLKTQK---MD 487

Query: 498 QADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYY---EIEKSIQDNPEFDSKKAQKR 554
           +A G Y+    Y + QA+++G  + ++      K+      ++K  +      SK+ Q+ 
Sbjct: 488 KAFGGYIDE--YKINQAVDDGATVRILYEGRQVKTEVAGESLDKLFEAYFGSYSKEEQRE 545

Query: 555 LRAYVEASQETIDTKAEI------MLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYR 608
           ++      +   +  A I      +LEH+ KH+          K M+V  +  +A  + +
Sbjct: 546 IKQKYGVERAVREAPARIRWVCMDLLEHYRKHIQ-----PDGFKAMIVVGSRHAATIFKK 600

Query: 609 ALTRQLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSPI 668
            L    +++G P    I       + G    EA I    +           K+K+     
Sbjct: 601 TL----DELGAPPSEVI-------ISGYHNDEAYIAVHTD---------KTKQKKIIQDF 640

Query: 669 PKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTE 728
            K + ++    L+V +  LTGFD P    MY+D+KL     +QA++R+NR+   Y KK E
Sbjct: 641 TKPLSENPVAFLIVKDMLLTGFDAPIAQVMYIDRKLQDHTLMQAIARVNRT---YAKK-E 696

Query: 729 DLFVLDFFN------------SVDDIKTAFDPFYTSTTLSEATD---VNVLHELKDDMDD 773
             F++D+F             S DD++  +          +AT    ++    +K+   D
Sbjct: 697 CGFIVDYFGLSNHLIEAMEMFSSDDVEGTYQSLKDEIPKLKATHTLAISFFRHIKN--KD 754

Query: 774 TDVYEWFEVEEFNKRFFE---GREAQDLSPII-DIAAARFNHELEL 815
            D Y     EE  +  F+    R A+ ++ ++ D+AAA F  +++L
Sbjct: 755 VDSYVLALKEETVRAQFDMAFKRFAKQMNIVLPDVAAAPFLADMKL 800