Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1086 a.a., type I restriction-modification system subunit R from Klebsiella michiganensis M5al

 Score =  100 bits (250), Expect = 4e-25
 Identities = 147/608 (24%), Positives = 248/608 (40%), Gaps = 106/608 (17%)

Query: 159 DMVLFINGIPLITLELKNPWTGQNA-VYHGQKQY--RDDRDANQPLLNFARCLVHMAVDT 215
           D +L+ING+PL+  E K+    Q A +    KQ   R  RD  Q  +  A C++   V+ 
Sbjct: 168 DAILYINGLPLVVFEFKSAVREQEANIGDAYKQLCTRYRRDIPQLFVYNALCIISDGVNN 227

Query: 216 DEVYMTTKLAGKNTFFLPFNKGFNFGK--GNPIN-----PHGHKTAYLWQEVFRKESIAN 268
                          F P+   +++ K  GN        P  H    + Q +F    + +
Sbjct: 228 R----------MGNLFAPYEYFYSWRKVTGNENREQDGIPSLHS---MIQGLFHPVRLLD 274

Query: 269 IIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSV---NGVGQTYLIQHSAGSG 325
           +I++FI     +K ++ K    +P+Y+    +   ++       +G G TY    + G G
Sbjct: 275 VIKNFICFPDKAKHEV-KICCRYPQYYAARKLYYSIERARKPFGDGKGGTYF--GATGCG 331

Query: 326 KSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRD---NIKEFS 382
           KS ++ +    L+++   +               +++++TDR  LD QL     N K + 
Sbjct: 332 KSYTMQFLTRLLMKSVEFASP-------------TIVLITDRTDLDDQLSAQMCNAKNYI 378

Query: 383 EVKNIVAPAFKSSELKSAL--ENGKKIIITTIQKFPYIVDGIADLSDRRFAVIIDEAHSS 440
               +V P     +L+  L   N   + +TTI KF    + ++  S+     I DEAH S
Sbjct: 379 GDDTVV-PVTSRDDLREKLAGRNSGGVFLTTIHKFTEDTELLSGRSN--IICISDEAHRS 435

Query: 441 QDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRS----------NASYFAFTATPKNTT 490
           Q   +Q           + ++DK  +S + RK              A+Y  FT TP + T
Sbjct: 436 QVNLDQ-----------KVIVDK--ESGRVRKTYGFAKYLHDSLPQATYVGFTGTPIDAT 482

Query: 491 LEKFGQRQADGTYVPFHLYSMKQAIEEGF-------------ILDVIANYTTYKSYYEIE 537
           +E FG             Y+M +++++               ILD        K Y E  
Sbjct: 483 MEVFGNIVDS--------YTMTESVQDEITVRIVYEGRAAKVILDTRKLEEVEKYYEECA 534

Query: 538 KSIQDNPEFD-SKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVV 596
            +  +  + D SKKA   + A +    + ++  AE   +H+ K V  G  +KGK   M V
Sbjct: 535 NAGTNEWQIDESKKASATMNAIL-GDDDRLEALAEDFAKHYEKRVNEGSTVKGKA--MFV 591

Query: 597 TQNIESAIRYYRALT----RQLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTK 652
             + E A  +YR L             P  V +     KE+   E  +  +    +   K
Sbjct: 592 CASREIAWDFYRQLKDFRPEWFEVKQAPDDVELTEQEEKELPPSEMVKMVMTRGKDDHAK 651

Query: 653 DYFDVNYK--RKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCV 710
            Y  +  K  RKE D        +  +++ +V + +LTGFD P+L  +Y+DK L     +
Sbjct: 652 LYELLGSKEYRKELDKQFKNA--KSNFKIAIVVDMWLTGFDVPELDTIYIDKPLQKHNLI 709

Query: 711 QALSRLNR 718
           Q +SR+NR
Sbjct: 710 QTISRVNR 717