Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1099 a.a., type I restriction-modification enzyme, R subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  115 bits (287), Expect = 2e-29
 Identities = 186/780 (23%), Positives = 317/780 (40%), Gaps = 166/780 (21%)

Query: 139 NLFSVTRQV-CYSNANPLEEI-DMVLFINGIPLITLELKNPWTG---QNAVYHGQKQY-- 191
           NLF VT ++   S+A     I D+V F+NGIP + +E K P +G   ++ +  G  Q   
Sbjct: 130 NLFHVTEEMDVLSSAGTHRRIPDIVCFVNGIPFVVIEAKRPESGNPNKSMLEEGVSQSIR 189

Query: 192 RDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKG------FNFGKGNP 245
              +D    L  +A+ L+ ++ +T+  Y TTK   K  F+  + +       F+  K  P
Sbjct: 190 NQKKDEIPHLFCYAQLLMAIS-NTEGRYATTKTPKK--FWATWREEIFDDVTFHTIKNTP 246

Query: 246 INPHGHKTAY-------------LWQ-------------EVFRKESIANIIQHFIRLDGS 279
           ++       +             LW               + RK+ +  ++Q++I  D  
Sbjct: 247 LSADAKDALFQDRPKAMRNYFESLWSGDVLPTQQDKLLVSLLRKDRLLKLVQYYILFDKR 306

Query: 280 SKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIE 339
             K + +    F     ++ V+RL    S  G     +I H+ GSGKS ++ + +  L+ 
Sbjct: 307 VGKIVARYQQAFGIRAMLERVKRLDKAGSREGG----VIWHTTGSGKSFTMVFLSKALL- 361

Query: 340 TYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKS 399
              +  DL   R         VI+VTDR  L+KQL           + VA   +    ++
Sbjct: 362 ---LEPDLRDCR---------VIIVTDRVDLEKQLSRTFLTGGAFGSAVATKKEGERARA 409

Query: 400 ------ALENGK---KIIITTIQKFPYI--VDGIADLSDRRFAVIIDEAHSSQDGHNQDK 448
                 A   GK   +II + I KF     +    + SD+   V++DE H S  G   ++
Sbjct: 410 GSGRDLAQRIGKGDDRIIFSIIDKFNTASKLPECYNPSDK-IIVLVDEGHRSHGGETHER 468

Query: 449 LNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATP---KNTTLEKFGQRQADGTYVP 505
           + +A+                      NA+Y AFT TP    + T  KFG          
Sbjct: 469 MRKAL---------------------PNAAYIAFTGTPLLKDDKTQNKFGPI-------- 499

Query: 506 FHLYSMKQAIEEGFILDVI---------ANYTTYKSYYE-IEKSIQDNPEFDSKKAQKRL 555
            H Y+M++A+E+G +  ++          N     ++++ I   + +  + D KK     
Sbjct: 500 IHAYTMQRAVEDGTVTPLLYEERRPELAVNEAAIDNWFDKITARLTEEQKTDLKKKFANK 559

Query: 556 RAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKG-KGMVVTQNIESAIRYYRALTRQL 614
            A V  S+  I+  A  +  HF  H+    K  G G KG +   +  SA+RY + L    
Sbjct: 560 GA-VYGSENRIELIAWDIATHFSDHI----KTLGMGLKGQLAADSKLSAVRYKKHLDAT- 613

Query: 615 NKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDT-------KDYFDVNYKRKEPDSP 667
                    A+  S     +G  + + D +  PE          K      YK+ E    
Sbjct: 614 ----GLVTSAVVISPPDTREG--HADVDESALPEVQQWAEKTVGKSASAEQYKQYE-QRV 666

Query: 668 IPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNR--SAPKYGK 725
           I      D   +L+V +K LTGFD+P+   +Y+DK L     +QA++R+NR   A +YG 
Sbjct: 667 IEDFATDDGVDILIVVDKLLTGFDEPRNTVLYIDKPLKEHNLLQAIARVNRLHEAKEYG- 725

Query: 726 KTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDVNVLHELKDDMDDTD-VY-----EW 779
                 ++D+   + ++          TTL E  D+    +   D+DD + +Y     E+
Sbjct: 726 -----LLIDYRGILKEL---------DTTLKEYQDLQERTQSGFDVDDIEGLYHQVGTEY 771

Query: 780 FEVEEFNKR----FFEGREAQDLSPIIDIAAARFNHE-----LELENEFKVDFKVKAKQF 830
             + E +KR    F + +  QDL     I   ++  +     ++L  + + DF     +F
Sbjct: 772 KRLPEQHKRLWGIFRDVKNRQDLEQYRQILMPQYTEDDDGTSIDLRQKVREDFYQALTEF 831