Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 964 a.a., type I restriction-modification system restriction subunit from Caulobacter crescentus NA1000

 Score =  463 bits (1191), Expect = e-134
 Identities = 334/966 (34%), Positives = 493/966 (51%), Gaps = 117/966 (12%)

Query: 34  APLNYNNDLYLIGSPSDFDKQYALDTRLFWQFLEDTQASELEKLKRTSPHDWQRKILERF 93
           A L  N  LY   +    D+  AL       +++D+Q    + L R +     + + +R 
Sbjct: 15  AHLAANGWLYDGAAGDRHDRTRALYVEDLVAWVQDSQPEAWDGLSRANGAAAAQVLADRV 74

Query: 94  DRMIKRHGVLRLLKKGLDVDDAF--LSLMYPAPLASSSEKVKKDFSANLFSVTRQVCYSN 151
            + +   GVL +L+ G+++  A   + +    P    + ++ + + AN   V RQV Y+ 
Sbjct: 75  RKSLDERGVLDVLRNGVELVGARGRIQMAQFKPAMGMNPEIVRRYEANRLRVARQVKYAV 134

Query: 152 ANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDAN------QPLLNF- 204
            N    +D+VL++NG+P+ T ELK+ +T   +V     QYR DR+        +PLL F 
Sbjct: 135 GNE-NCLDLVLYLNGLPVATAELKSDFT--QSVEDAINQYRFDREPRPKGGREEPLLAFP 191

Query: 205 ARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYLWQEVFRKE 264
              LVH AV   EV MTTKL G++TFFLPFNKG + GKGNP+NP+GH+TAYLW+E++ ++
Sbjct: 192 GGALVHFAVSNSEVAMTTKLQGRDTFFLPFNKGDHGGKGNPLNPNGHRTAYLWEEIWARD 251

Query: 265 SIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQTYLIQHSAGS 324
           S   I+  ++     +KK++   ++ FPRYHQ+D  R+L       G G  +LIQHSAGS
Sbjct: 252 SWLEILGRYMVTKRDAKKRI--TSVVFPRYHQLDATRKLAAQVLAEGAGGKFLIQHSAGS 309

Query: 325 GKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEV 384
           GK+NSI W+A+ L E +  +D+          LF SVIVV+DR ++D QL++ + +F   
Sbjct: 310 GKTNSIAWSAHILSELHDAADN---------KLFSSVIVVSDRNVIDTQLQEALFDFQRT 360

Query: 385 KNIVA-----PAFKSSELKSALENGKKIIITTIQKFPYIVDGI---ADLSDRRFAVIIDE 436
             +VA        KS +L  AL  GKK+I+ TIQ FP+ ++ +   A    + FAVI DE
Sbjct: 361 AGVVATIKSESGSKSGQLAEALAAGKKVIVCTIQTFPFALEAVREQAATQGKAFAVIADE 420

Query: 437 AHSSQDGHNQDKLNEAMG------FVSEDVLDKALQSAKNRKMRS----NASYFAFTATP 486
           AHSSQ G    KL + +             +D   Q   N   R+    + +Y AFTATP
Sbjct: 421 AHSSQTGEAAGKLKQMLSDAEIAELADGGEIDFETQLTANMAGRAASDKSITYVAFTATP 480

Query: 487 KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQ--DNP 544
           K  TL+ FG+  ADG   PFH+YSM+QAIEEGFILDV+ NYT Y   +++    Q  D  
Sbjct: 481 KAKTLQLFGRPDADGLPAPFHVYSMRQAIEEGFILDVLKNYTPYSLAFKLANDGQEWDER 540

Query: 545 EFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAI 604
           E +   A K +  +V      I  K +I++EH+ ++V     L GK K MVV  + + A+
Sbjct: 541 EVERDTALKGIMRWVRLHPYNIAQKVQIVVEHYRENV--QPLLDGKAKAMVVLGSRQEAV 598

Query: 605 RYYRALTRQLNKMGNPFKVAIAFSG---SKEVDGIEYTEADIN-GFPEGDTKDYFDVNYK 660
           R+  A+   + KMG P    +AFSG     E+  +  T A +N G    D +D F     
Sbjct: 599 RWSVAINAYIRKMGYPLGTLVAFSGEVNDDELGAVSETSAALNPGLNGRDIRDAFKA--- 655

Query: 661 RKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSA 720
                         + +  L+VANK+ TGFDQP LC MYVD++LA +  VQ LSRLNR+ 
Sbjct: 656 --------------ENFHFLLVANKFQTGFDQPLLCGMYVDRRLAGIQAVQTLSRLNRAH 701

Query: 721 PKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDVNVLHELKDDMDDTDVYEWF 780
           P  GK T   ++LDF NS +DI TAF  +Y +  L  ATD N++++L+  +D    Y+  
Sbjct: 702 P--GKDT--TYILDFCNSAEDILTAFRTYYETAELEAATDPNLIYDLRAKLDAAGHYDDH 757

Query: 781 EVE-----EFNKRFFEGREAQDLSPIIDIAAARFNHELE-----------------LENE 818
           E+E     E + +  +G     L P+ D     F    +                 L++ 
Sbjct: 758 EIERVVRVELDPKAKQGDLIAALEPVADRLVKAFAAAKQAWVTAKAQDDERAAAEALDHM 817

Query: 819 FKVD-FKVKAKQFVKIYGQIASIMPYEVVQWEKLFWFLKFLIPKLSV--EDPDKEALDSL 875
             +D FK     F ++Y  ++ I  Y   + EK   F + L+P L    E P        
Sbjct: 818 NALDLFKGDMAAFQRLYSFLSQIFDYGNTEIEKRSIFFRRLLPLLEFGRERP-------- 869

Query: 876 LDSVDLSSYGLQRVKLNHSIELDDSETELDPQNPNPR-------GAYG-PEAEKDPLDEI 927
              VDLS   L     +H+++    +  L      P+       G+ G  E EK  LDEI
Sbjct: 870 --GVDLSGLRL----THHALKTKGQQDLLYGTGEAPKLSGMAEVGSGGLHEKEKARLDEI 923

Query: 928 IKIFNE 933
           I   N+
Sbjct: 924 IAKLND 929