Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1097 a.a., type I restriction enzyme, R subunit from Paraburkholderia bryophila 376MFSha3.1

 Score = 93.2 bits (230), Expect = 9e-23
 Identities = 163/712 (22%), Positives = 280/712 (39%), Gaps = 153/712 (21%)

Query: 135 DFSANLFSVTRQ--VCYSNANPLEEIDMVLFINGIPLITLELKNP---WTGQNAVYHG-Q 188
           D SAN + VT +  V  +        D+V ++NG+PL+ +E K P     GQ  V  G  
Sbjct: 127 DPSANRWDVTEELEVLSTQGTHRRVPDVVAYVNGLPLVVIEAKRPDATHPGQAMVDEGIS 186

Query: 189 KQYRDDRDANQPLLNFARCLVHMAVD-TDEVYMTTKLAGK-------------------- 227
           +Q R+ R    P L FA   + +AV  T+  Y TT    K                    
Sbjct: 187 QQLRNQRHDEIPQL-FAYAQLLLAVSHTEGRYGTTSTPMKFWARWREEQFSDAQLTEWKN 245

Query: 228 -------NTFFLP---------FNKGFNFGKGNPINPHGHKTAYLWQEVFRKESIANIIQ 271
                   T  L          F++ +   + +P+ P       L   +   + +   ++
Sbjct: 246 RSLGADVETALLADKPPKIQAYFSQLWAQSQTHPLLPADQDR--LLAALLHPQRLLEFLR 303

Query: 272 HFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSV---NGVGQTYLIQHSAGSGKSN 328
            F+  D  + K +        RY Q   +R L++  ++   +G     ++ H+ GSGKS 
Sbjct: 304 LFVLFDRKAGKVV-------ARYQQFFGIRALLERINLRKPDGGRDGGVVWHTTGSGKSF 356

Query: 329 SITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIV 388
           ++ +    L+    +       R         V+VVTDR  L+ QL  N        + V
Sbjct: 357 TMVFLTKALV----LHQSTQACR---------VVVVTDRLDLEDQLARNFMNSGAFGSAV 403

Query: 389 AP--------AFKSSELKSALENG-KKIIITTIQKFPY---IVDGIADLSDRRFAVIIDE 436
           A              EL   +  G ++I+ T I KF     + +     SD    V++DE
Sbjct: 404 ATKKDGEKAKVGSGRELAKRIGKGTERIVFTLIHKFATASKLAECYNPSSD--MIVLVDE 461

Query: 437 AHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATP---KNTTLEK 493
            H S  G   +++ +A+                       A+Y AFT TP   K+ T  K
Sbjct: 462 GHRSHGGETHERMRKAL---------------------PRAAYVAFTGTPLLKKDKTANK 500

Query: 494 FGQRQADGTYVPFHLYSMKQAIEEGFILDVI---------ANYTTYKSYYE-IEKSIQDN 543
           FG           H Y+M++A+E+G +  ++          N      +++ I   +   
Sbjct: 501 FGPI--------VHAYTMQRAVEDGTVAPLLYEERVPELSINEEAVNRWFDRITAGLSPE 552

Query: 544 PEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESA 603
              D K+     +A   A+   I+  A  +  HF +++   KKL    KG V T +   A
Sbjct: 553 QAADLKRKFANKQAVYGAANR-IELIAWDIAHHFSENI---KKLGLGLKGQVATASKLEA 608

Query: 604 IRYYRALTRQLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTKDYFDVNYKRKE 663
           IRY + L             A+  S     +G   TE D +  PE   + +++ N  +  
Sbjct: 609 IRYKQYLDDT-----GLVSSAVIISAPDSREG--NTEVDESKLPE--VQKWWNTNVGKNA 659

Query: 664 P---DSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNR-- 718
               +  +     +    LL+V ++ LTGFD+P+   +Y+DK L     +QA++R+NR  
Sbjct: 660 AGYEEQTLLDFSSEGEPDLLIVVDRLLTGFDEPRNTVLYIDKPLKEHNLIQAVARVNRLH 719

Query: 719 SAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLS----EATDVNVLHE 766
            A +YG       ++D+   + ++ TA   +    T +    E  D++ L++
Sbjct: 720 EAKRYG------VLVDYRGILKELDTAVRAYQDLETRTQGGYELADIDGLYQ 765