Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 942 a.a., Type I restriction enzyme EcoR124II R protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  102 bits (255), Expect = 1e-25
 Identities = 166/719 (23%), Positives = 258/719 (35%), Gaps = 165/719 (22%)

Query: 73  ELEKLKRTSPHDWQRKILERFDRMIKRHGVLRLLKKGLDVDDAF-LSLMYPAPLASSSE- 130
           E+   KR   H       E F++      +L  L+ G   + A  L  +YP   A     
Sbjct: 42  EIHNRKRLEEHGRTEFTAEEFEK------ILIYLEGGTRFEKAKKLRDLYPLDTADGQRI 95

Query: 131 ----KVKKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYH 186
                 ++ +  N F V+ Q+           D+ + ING+PL+ +ELK         Y+
Sbjct: 96  WVEFLNRQQWCQNEFQVSNQITVEGRKKCR-YDVTILINGLPLVQIELKRRGVELKQAYN 154

Query: 187 GQKQYRDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNF------ 240
             ++Y              +   H   D  ++++ +       F    N G+ F      
Sbjct: 155 QIQRYH-------------KTSFHGLFDYIQLFVISNGVNTRYFANNPNSGYKFTFNWTD 201

Query: 241 GKGNPINPHGHKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVV 300
              +P N       +       K ++  II  +I L    K       L   R +Q   V
Sbjct: 202 AANHPFNELDKFAVFF----LEKCTLGKIIGKYIVLHEGDK------CLMVLRPYQFYAV 251

Query: 301 RRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDS 360
            +++D   V        I H+ G+GK+ + ++ A QL+               E+   D 
Sbjct: 252 EKILDR--VQNSNDNGYIWHTTGAGKTLT-SFKAAQLV--------------SELDDVDK 294

Query: 361 VIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALENGKKIIITTIQKFPYIV- 419
           V+ V DR  LD Q +   + F      V     + EL   L++  KIIITTIQK    V 
Sbjct: 295 VMFVVDRHDLDTQTQSEYEAFE--PGAVDSTDNTDELVKRLQSNSKIIITTIQKLNAAVS 352

Query: 420 -----DGIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMR 474
                  I  +   R  +I DE H S  G +  K+ +  G                    
Sbjct: 353 KTWYSSKIDAIRHSRIVMIFDECHRSHFGDSHKKIMKFFG-------------------- 392

Query: 475 SNASYFAFTATP--------KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIAN 526
            NA  F FT TP         +TT E FG           H Y +K AI +  +L  +  
Sbjct: 393 -NAQIFGFTGTPIFTENAVDGHTTKEIFGN--------CLHKYLIKDAIADENVLGFLVE 443

Query: 527 YTTYKSYYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKK 586
           Y     Y+  E    DN                   Q  ++  A+ +L +F     N   
Sbjct: 444 Y-----YHGNEIVDNDN-------------------QARMEEIAKFILNNF-----NKST 474

Query: 587 LKGKGKGMVVTQNIESAIRYYRALTRQLN---KMGNPFKVAIAFSGSKEVDGI------- 636
             G+   +   Q++   IRYY+ + R LN   ++G  F  A   S   E  G+       
Sbjct: 475 FDGEFDALFAVQSVPMLIRYYK-IFRSLNPKIRIGAVFTYAANNSQDDEQTGMGTGQYAK 533

Query: 637 --------------EYTEADINGFPEGDTKDYF-DVNYKRKEPDSPIPKHVDQDAYRLLV 681
                         +Y E     F   + + Y+ D+N + K+      K  D     L +
Sbjct: 534 ESVGEADELQAIMDDYNENFGTSFTTENFRAYYDDINLRMKK------KKADMKPLDLCL 587

Query: 682 VANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVD 740
           V   +LTGFD  KL  +YVDK +     +QA SR NR   +  +  + +   D  N+VD
Sbjct: 588 VVGMFLTGFDSKKLNTLYVDKNMEYHGLLQAFSRTNRVLNEKKRFGKIVCFRDLKNNVD 646