Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1053 a.a., HsdR family type I site-specific deoxyribonuclease (RefSeq) from Shewanella sp. ANA-3

 Score = 78.6 bits (192), Expect = 2e-18
 Identities = 169/781 (21%), Positives = 294/781 (37%), Gaps = 157/781 (20%)

Query: 135 DFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAV--------YH 186
           D S N F  T Q            D+V F+NG+PL  +E K+P+     V        Y 
Sbjct: 119 DVSNNEFICTNQFKVEGTKQTIIPDIVCFVNGLPLAVIECKSPFISTPVVCGIDQLRRYA 178

Query: 187 GQKQYRDDRDA------NQPLLNFARCLVHMA-------------------------VDT 215
            Q+   D   A      NQ +++ +R +  +                          VD+
Sbjct: 179 NQRHPEDFEGAEKLFWYNQLMVSTSRDIARVGTISSPAQYYADWKDAYPLTDAQIAQVDS 238

Query: 216 DEVYMTTKLAGKNTFFLPFNKGFNFGKGNPI---NPHGHKTAYLWQE------VFRKESI 266
           D V     LA K T   P       G   P     P  ++ A +  +      +F +E+ 
Sbjct: 239 DNV---VPLAKKLTVEQPVASVDAAGSELPQVAEPPADYQVAKVTAQQRLLAGMFSRENF 295

Query: 267 ANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGV--GQTYLIQHSAGS 324
            +I+++FI  +    + + K      RY Q   V +++           ++ ++ H+ GS
Sbjct: 296 LDIVRNFILFEPDDGRLIKK----VARYQQFRAVNKVIHQLKTGKTRKDKSGVVWHTQGS 351

Query: 325 GKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEV 384
           GKS ++   A ++        DL   + K       ++ VTDR  LD+QL    +     
Sbjct: 352 GKSLTMVMLAVKM------RHDLELKQYK-------LVFVTDRTQLDEQLSATFQ--GAQ 396

Query: 385 KNIVAPAFKSSELKSALENGKKIIITT-IQKFPYIVDGIADLSDRRFA---------VII 434
              V  A   + L+  L+     ++T  +QKF           D+ F          V+ 
Sbjct: 397 GETVYNADSVAALRDLLKKDSSDLVTAMVQKFQDAEKEAQQQGDKSFVNINTSDKIIVLA 456

Query: 435 DEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTLEKF 494
           DEAH +Q G     +N A+                      NA    FT TP   T +  
Sbjct: 457 DEAHRTQFGGLATTINAAL---------------------PNAPKIGFTGTPLLKTQK-- 493

Query: 495 GQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSYY---EIEKSIQDN-PEFDSKK 550
               A G Y+    Y + +A+E+G  + ++      K+      ++   ++   ++  ++
Sbjct: 494 -MDTAFGGYID--KYKINEAVEDGATVRLLYEGREVKTAVAGESLDALFEEYFGDYTKEE 550

Query: 551 AQKRLRAY-VEASQETIDTKAEIMLEHFIKHVVNGKKLKGKG-KGMVVTQNIESAIRYYR 608
            Q+  R Y VE +      +   +    +KH    ++++  G K M+V  +  +A  + +
Sbjct: 551 QQEIKRKYGVEKAVREAPARIRWVCIDLLKHY--RERIRPDGFKAMIVVGSRHAATLFKK 608

Query: 609 ALTRQLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSP- 667
            L         P +V I+   +      +YT+         + K  F +       DSP 
Sbjct: 609 TLDEL---KAPPSEVIISGDHNDPQYIAQYTDKVHQKKVIANFKKPFGI-------DSPG 658

Query: 668 -IPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKK 726
              K    D    L+V +  LTGFD P    MY+D+KL     +QA++R+NR+     K 
Sbjct: 659 TDEKQRKFDNTAFLIVKDMLLTGFDAPIAQVMYIDRKLQDHTLMQAIARVNRNY----KG 714

Query: 727 TEDLFVLDFFNSVDDIKTAFDPFYTSTTLSEATDVNVLHE-LKDDMDDTDVYEWFEVEEF 785
            E  +V+D++     +  A + F        + DV   ++ LKD++              
Sbjct: 715 KECGYVVDYYGLTSYLTDALELF-------SSDDVEGTYQSLKDELPKLQA-----AHTR 762

Query: 786 NKRFFEGREAQDLSPIIDIAAARFNHELELENEFKVDFKVKAKQFVKIYGQI---ASIMP 842
            K FF+G  + D+   + +           ++ F+  F+V  K+F K    I   AS  P
Sbjct: 763 LKAFFKGVTSDDVDDYVVVLK---------DDAFRAQFEVAYKRFAKQLNVILPDASAKP 813

Query: 843 Y 843
           Y
Sbjct: 814 Y 814