Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1167 a.a., type I restriction enzyme EcoKI subunit R (RefSeq) from Shewanella sp. ANA-3

 Score = 49.7 bits (117), Expect = 1e-09
 Identities = 99/478 (20%), Positives = 192/478 (40%), Gaps = 80/478 (16%)

Query: 317 LIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRD 376
           L+  + G+GK+ +I    Y+ ++                  F  V+ + DR  L  Q ++
Sbjct: 468 LLAMATGTGKTRTIIGLIYRFLKA---------------ERFKRVLFLVDRFALGDQAQN 512

Query: 377 NIKEFSEVKNI-VAPAFKSSELKS-ALENGKKIIITTIQ---KFPYIVDGIADLSDRRFA 431
           + KE S  +N+ ++  +  +EL   A E   +I ++T+Q   K  ++ D    L D+   
Sbjct: 513 DFKEVSLEQNLSLSGIYNIAELGDMAAEAETRIQVSTVQAMVKRVFMSDNPPPL-DQFDC 571

Query: 432 VIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTL 491
           +I+DEAH    G+  D+        + D   + L S +      +A   A TATP   T 
Sbjct: 572 IIVDEAHR---GYTLDQEMTEGEIATRDAA-QYLSSYRRVLDYFDAVKIALTATPAKHTS 627

Query: 492 EKFGQRQADGTYVPFHLYSMKQAIEEGFILD--VIANYTTYKSYYEIEKSIQDNPEFDSK 549
           E FG+        P + YS ++A+ E +++D      Y T  +        Q+   F   
Sbjct: 628 EIFGK--------PVYTYSYREAVAEDWLIDHEPPIRYETLLT--------QNGISFTKG 671

Query: 550 KAQKRLRAYV-EASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYR 608
           +    +     E     ++ +    +E F + V+N              +N    I    
Sbjct: 672 ETVSAINTQTGEIESAELEDELNFEVEAFNRCVIN--------------ENFNKVI--CE 715

Query: 609 ALTRQLNKMGNPFKVAIAFSGSKEVDGI-----EYTEADINGFPEGDTKDYFDVNYKRKE 663
            L ++L+  G+  K  I  +     D +     +  +A  NG  E +      +  +  +
Sbjct: 716 QLVQELDPFGDE-KTLIFCATDLHADMVKRLLDDAFKAIYNG--EYNQAAVAKITGQSDK 772

Query: 664 PDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLAS-VLCVQALSRLNRSAPK 722
            +  I ++ ++    + +  +   TG D PK+C +   +++ S +L  Q + R  R    
Sbjct: 773 VNQLIKQYKNERYPNIAITVDLLTTGIDVPKICNLVFMRRVKSRILYEQMIGRATRRCDD 832

Query: 723 YGKKTEDLF-VLDFFNSVDDIKTAFDPFYTSTTLSEATDVNV-LHELKDDMDDTDVYE 778
            GK    ++  +D + ++ D+ T  +P           D NV + +L D++ D +  E
Sbjct: 833 IGKTVFRIYDPVDIYAALSDVNT-MNPL--------VKDPNVTIEQLIDELSDPESLE 881