Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1084 a.a., HsdR family type I site-specific deoxyribonuclease (RefSeq) from Shewanella sp. ANA-3

 Score =  124 bits (312), Expect = 3e-32
 Identities = 170/691 (24%), Positives = 284/691 (41%), Gaps = 113/691 (16%)

Query: 139 NLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDAN 198
           N F V  Q   +        D+V+FING+P+  +ELKNP      ++H   Q +  +D  
Sbjct: 125 NEFLVVNQFTITGKKGNRRPDVVVFINGLPIAVIELKNPADEHADIWHAYNQLQTYKDEI 184

Query: 199 QPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYLWQ 258
             L  F   LV   V          L      FLP+ K  +     P+  +  +T  + +
Sbjct: 185 PDLFVFNESLV---VSDGWTARVGSLTANKERFLPW-KTVSGEDDKPLWDYQLET--MVK 238

Query: 259 EVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVN-------- 310
             F+ + + + I++F+  +  +   + K       YHQ   VR  V+  +V         
Sbjct: 239 GFFKPDLLLDYIRYFVLFETDNDTVIKK----IAGYHQFHAVRAAVE-ATVRAKQADGEL 293

Query: 311 -----------------------GVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDL 347
                                  G G+  ++ H+ GSGKS S+   A +L++   +++  
Sbjct: 294 PLVAESMGQYQVQATKGLDKIKPGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNN-- 351

Query: 348 PGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSE-VKNIVAPAFKSSELKSALENGKK 406
                       +++VVTDR  LD QL +      E +K + + A    +L+  L + + 
Sbjct: 352 -----------PTIVVVTDRNDLDGQLFNTFGMAHETLKQVPSQADGRDKLRELLLSRQS 400

Query: 407 --IIITTIQKFPYIVDGIAD--LSDR-RFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVL 461
             II TTIQKF  + +      LS R    V+ DEAH SQ G N+ KL +     + +V+
Sbjct: 401 GGIIFTTIQKFALLAEETEHPVLSTRANIVVVSDEAHRSQYG-NKSKLVDVKD-ANGNVI 458

Query: 462 DKALQSAKNRKMRS---NASYFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEEG 518
            +      ++ MR    NAS+  FT TP    ++    R   G YV   +Y ++ A+++G
Sbjct: 459 SQKFVYGYSKYMRDALPNASFIGFTGTP--IAMDDKDTRGVFGEYV--SIYDIQDAVDDG 514

Query: 519 FILDV-----IANYTTYKSYYE-----IEKSIQDNPEFDSKKAQKRLRAYVE---ASQET 565
             + +     +A     ++  E     IE  I ++ E  S++  K   A +E    ++  
Sbjct: 515 ATVPIYYESRLAKLDINQAEIEQLNDQIEDEIGEDEETASREKIKSQWATLEKLVGAEPR 574

Query: 566 IDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGN--PFKV 623
           I   A+ ++ HF             GK M+V  + E  +  Y A+     +  N  P K 
Sbjct: 575 IQQVAQDLVNHFTTRTET-----FPGKAMIVAMSREICVDLYNAIVAIKPEWHNDDPAKG 629

Query: 624 AIAFSGSKEVDGIEYTEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVA 683
           AI    +         +  I+   +  TK  F+  YK             QD  +L++V 
Sbjct: 630 AIKIVMTGSASDKPKMQPHIH---DKKTKKLFEARYKD-----------TQDELQLVIVR 675

Query: 684 NKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIK 743
           + +LTGFD P    MYVDK +     +QA++R+NR      K      V+D+    +++K
Sbjct: 676 DMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNR----VFKDKPGGLVVDYIGIANELK 731

Query: 744 TAFDPFYTS-----TTLSEATDVNVLHELKD 769
            A   +  S      T+  A   +VL E  D
Sbjct: 732 NALKTYTNSQGKGQPTVDTAEAFSVLMEKVD 762