Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1076 a.a., HsdR family type I site-specific deoxyribonuclease (RefSeq) from Shewanella sp. ANA-3

 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 148/665 (22%), Positives = 243/665 (36%), Gaps = 149/665 (22%)

Query: 141 FSVTRQVCYSNANPLEEI---DMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDA 197
           + + +Q  +   +PL      D++L ING+P+I +ELK      +   +  ++Y  +   
Sbjct: 123 YQIVQQPKFERGSPLRNDRRGDVLLLINGMPVIHVELKRSGVPVSQAVNQIEKYSKE-GI 181

Query: 198 NQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPIN-PHGHKTAYL 256
              L +  +  V M  +  + +    L GK      FN  + F   +  N P  H     
Sbjct: 182 FSGLFSLIQVFVAMEPNEAKYFANPGLDGK------FNPDYQFNWADFNNEPMNH----- 230

Query: 257 WQEV---FRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVG 313
           W+++        +A+ +  F  +   +   L     +  +Y+  + +   V   +   +G
Sbjct: 231 WKDIASTLLSIPMAHQLIGFYTVADDTDGVLKVMRSY--QYYAANAISDKVAKTNWQQLG 288

Query: 314 QTY--------LIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVT 365
                       + H+ GSGK+ + ++ + QLI           ++ K+    D VI + 
Sbjct: 289 SAANNPDRLGGYVWHTTGSGKTMT-SFKSAQLI-----------AQSKDA---DKVIFLM 333

Query: 366 DRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALEN---GKKIIITTIQKFPYIVDGI 422
           DR  L  Q     + F+     V     +  L + L++      +I+++IQK   I + +
Sbjct: 334 DRIELGTQSLAEYRNFAGDGEDVQATENTHVLVTKLKSTSPADTLIVSSIQKMSNIFEEV 393

Query: 423 AD------------LSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKN 470
            D            +  +R   IIDEAH S  G         M  + +    +AL     
Sbjct: 394 DDEGTATNSADIEKIRAKRLVFIIDEAHRSTFGD--------MLIIIKRTFPRAL----- 440

Query: 471 RKMRSNASYFAFTATPKNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTY 530
                   +F FT TP     EK G   +       H YS+   I +G +L     +  Y
Sbjct: 441 --------FFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDGNVL----GFDPY 488

Query: 531 KS------------YYEIEKS-----IQDNPEFDSK------------------KAQKRL 555
           K               E  KS       DNP    K                  K  K +
Sbjct: 489 KVPTFRDGDLRQAVALEQAKSGSVAEAMDNPAKKKKFNYFMNEVPMAGYKDSTGKYHKGI 548

Query: 556 RAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLN 615
             YV  SQ   +T    ++E  + H  +      K   ++ T +I  AI YYR L     
Sbjct: 549 EDYVPKSQYLSETHQAKVVEDIL-HKWDVLSQGNKFHAILATNSIAEAIDYYRLL----- 602

Query: 616 KMGNP-FKVAIAF--------SGSK----EVDGIEYTEADINGFPEGDTKDYFDVNYKR- 661
           K   P  KV+  F        SG +    + DG++    D N     D        +K+ 
Sbjct: 603 KAAKPDLKVSALFDPNIDNDGSGDRGPTFKGDGLDEIMRDYNARYGHDFDFARHAAFKKD 662

Query: 662 -------KEPDSPIPKHVDQDAYR-LLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQAL 713
                  K+P   I  H D      LL+V ++ LTGFD   L  +Y+DK +     +QA 
Sbjct: 663 LAARLAHKKPYERI--HTDPTKQLDLLIVVDQMLTGFDSKWLNVLYLDKVIKYQNIIQAF 720

Query: 714 SRLNR 718
           SR NR
Sbjct: 721 SRTNR 725