Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 897 a.a., COG0553: Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas fluorescens FW300-N2E2

 Score =  159 bits (403), Expect = 7e-43
 Identities = 152/532 (28%), Positives = 233/532 (43%), Gaps = 99/532 (18%)

Query: 430 ELSENSPKVEQLISDISWDGELNWENHKRTPFPHQDIGVRWILGVEQKSLSDSKVSGALL 489
           E  E+   + Q + DI     +  E    T  P+Q  G+ W+  + Q  +      G +L
Sbjct: 396 EGGEHIRGLAQRLRDIKDYTTIAPEGLNATLRPYQLEGLSWMQSLRQLEV------GGIL 449

Query: 490 ADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKD 549
           ADDMGLGKT   L+   HI   +  +G   +P ++V P SL+ NW DE       +P   
Sbjct: 450 ADDMGLGKTLQTLA---HILSEKN-AGRLDRPCMVVMPTSLIPNWLDEAAH---FTPQLK 502

Query: 550 VVILQSSAELNEYRMGGVEIRGQSASDDCLEPKYSLKVGKYFGPSRLDLPERLVITTYQT 609
           V+ L  +                         KY  ++  Y           LV+TTY  
Sbjct: 503 VLALYGAGR----------------------KKYFDRLANY----------DLVLTTYAL 530

Query: 610 LRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTRAAKGLKADFKLVATGTPVENSLADFWC 669
           L      +      +++ DEAQ IKNP +   +AA+ L A  +L  +GTP+EN L + W 
Sbjct: 531 LPKDVERLAAQPLHVLILDEAQYIKNPTSKAAQAARELNARQRLCLSGTPLENHLGELWS 590

Query: 670 LMDTACPGHLGSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALMLRRIKEDNL 729
           L     PG LG  + F   Y  PI K   D       RL + L   +   +LRR KE   
Sbjct: 591 LFHFLLPGWLGDVKSFNRDYRVPIEKRGSD------VRL-QHLNGRIKPFLLRRTKEQVA 643

Query: 730 KGLPLKHMYAGGEFENWKYLEELKSTMVGYQRDVYEG---AISHQLENEESH-------- 778
             LP K      E  +W  L +        QRDVYE    A+  ++ +E +         
Sbjct: 644 TELPPK-----TEIIHWVELSDA-------QRDVYETMRLAMDKKVRDEITRKGVARSQI 691

Query: 779 -ALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETLDRVRSKQEKC 837
             L  L++LR      RL +   L          A    SGKL SL+E L+ +  +  + 
Sbjct: 692 IILEALLKLRQVCCDLRLINDATLP---------ARGSTSGKLDSLMEMLEELFEEGRRV 742

Query: 838 IIFAVNKRLQSFLSVTLGQIYNLG-PLSVINGDAKAVAKRKSVPTRKSMISDFEAKEGFN 896
           ++F+   +  S L++   ++   G   +++ G  +          R++ + +F++ +   
Sbjct: 743 LLFS---QFTSMLALIEDELKKRGVDYALLTGQTR---------DRRTPVKEFQSGKR-Q 789

Query: 897 LIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIY 948
           + ++S  A GVGL +  A+ V+H + +WNPA E QATDR YRIGQEK V +Y
Sbjct: 790 IFLISLKAGGVGLNLTEADTVIHYDPWWNPATENQATDRAYRIGQEKPVFVY 841