Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Pseudomonas stutzeri RCH2

 Score =  179 bits (453), Expect = 1e-48
 Identities = 151/494 (30%), Positives = 232/494 (46%), Gaps = 86/494 (17%)

Query: 462 PHQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKP 521
           P+Q  G+ W+  + +        +G +L DDMGLGKT   L +I HI   +Q +G   +P
Sbjct: 312 PYQLQGLAWMQTLRELG------AGGILGDDMGLGKT---LQSIAHILVEKQ-AGRLDRP 361

Query: 522 ALIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEP 581
           AL+V P SL+ NW+DE  +    +P   V+ L  ++    +        G+    D L  
Sbjct: 362 ALVVMPTSLIPNWQDEARR---FAPQLRVLTLTGTSRQKHF--------GELGEHDLLLT 410

Query: 582 KYSLKVGKYFGPSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQT 641
            Y+L            L   + +   Q L             +++ DEAQ+IKNP++   
Sbjct: 411 SYAL------------LTRDIAVLREQPLH------------VLILDEAQHIKNPSSKAA 446

Query: 642 RAAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEV 701
           +AA+ L+   +L  TGTP+EN L + W L     PG LG  + F   Y +PI K A +  
Sbjct: 447 QAARALQTRQRLCLTGTPLENHLGELWSLYHFLMPGWLGDAKRFTQDYRNPIEKHADE-- 504

Query: 702 EEIRARLGRELRIAVGALMLRRIKEDNLKGLPLKHMYAGGEFENWKYLEELKSTMVGYQR 761
                RL   LR  V   +LRR KE     LP K+     EF +W  L + +  +    R
Sbjct: 505 ----PRLA-HLRARVRPFLLRRTKEQVATELPAKN-----EFVHWVELNDAQRELYETLR 554

Query: 762 DVYEGAISHQLENE-----ESHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYG- 815
              +  +  ++E +     +   L  L++LR      RL  G         +S RA+ G 
Sbjct: 555 LAMDRKVRDEIERKGLARSQMVILEALLKLRQVCCDLRLLKG---------ESTRAIRGS 605

Query: 816 ESGKLVSLLETLDRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSV-INGDAKAVA 874
            SGKL SLLE LD + S+  + ++F+   +  S L++    ++  G   V + G+     
Sbjct: 606 SSGKLDSLLEMLDELMSEGRRVLLFS---QFTSMLALIEQALHKRGIAYVKLTGE----- 657

Query: 875 KRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATD 934
                  R++ +  F+A E   L ++S  A G GL +  A+ V+H + +WNPA E QATD
Sbjct: 658 ----TDDRRTPVERFQAGE-VPLFLISLKAGGTGLNLTAADTVIHYDPWWNPAAENQATD 712

Query: 935 RVYRIGQEKEVHIY 948
           R YRIGQ+K V +Y
Sbjct: 713 RAYRIGQDKPVFVY 726