Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1065 a.a., COG0553: Superfamily II DNA/RNA helicases, SNF2 family from Xanthomonas campestris pv. campestris strain 8004

 Score =  259 bits (662), Expect = 8e-73
 Identities = 192/529 (36%), Positives = 263/529 (49%), Gaps = 55/529 (10%)

Query: 463  HQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPA 522
            HQ  GV W+ G   +   D  V G LLADDMGLGKT  AL+ +    Q    +    KP 
Sbjct: 566  HQVEGVAWMQG-RMRQRGDG-VRGVLLADDMGLGKTLQALTLMAWYRQ----TAPAPKPC 619

Query: 523  LIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEPK 582
            LIVAP+SLLENWK E+ K         + +      L  +R+   EI  +      L  K
Sbjct: 620  LIVAPVSLLENWKAEIAKFLDGRQGATLTLYGEHLAL--HRLSAREIGPELRE---LGVK 674

Query: 583  YSLKVGKYFGPSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTR 642
             +L  G   G +        V+TTY+TLRDYQ SM    WG++V DEAQ IK P+A+ TR
Sbjct: 675  KALNPGFAHGAA-------FVLTTYETLRDYQLSMAREKWGVLVCDEAQKIKTPSAMVTR 727

Query: 643  AAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISPI-LKAAGDEV 701
            +AK ++ADFK+  TGTPVENSLAD WCL D   PG L S  +F   +   I L++ G E 
Sbjct: 728  SAKAMQADFKIACTGTPVENSLADLWCLFDFFQPGLLDSLTKFTKVFRQQIELRSEGHEQ 787

Query: 702  EEIRARLGRELRIAVGALMLRRIKEDNLKGLPLKHMYAGGEFENWKYLEEL--KSTMVGY 759
            +         LR  +   +LRR+K                E  + K   EL  +  M   
Sbjct: 788  KV------EVLREQISPWVLRRMK---------------AEVADLKPKTELPCELAMSAK 826

Query: 760  QRDVYEGAISHQLENEES------HALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARAL 813
            QR +Y  A     E  +S       AL+ L +LR    +P  +   R +     +  R  
Sbjct: 827  QRGLYAAAARRFRETVDSGEGGDTAALSLLHQLRQICANPLAAADDRSEFLSLDEHLR-- 884

Query: 814  YGESGKLVSLLETLDRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAV 873
               S KL  L+E L  +++  EK I+F   + +Q  +   +    +    S++NG     
Sbjct: 885  --HSPKLAWLIEKLQEIQATGEKVIVFTEFRDIQRLIQRAIASRLSY-QASIVNGSTSVE 941

Query: 874  AKRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQAT 933
            A      +R+ +I  F+AK  F +IV+S  A G G+ +  ANHV+H  R WNPAKE QAT
Sbjct: 942  AGADD--SRQIIIDAFQAKPDFGVIVLSTTAVGFGVNIQAANHVIHFTRPWNPAKEDQAT 999

Query: 934  DRVYRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVVTPE 982
            DR YRIGQEKEV +Y P +    FESF+  + + L  K  L + ++ PE
Sbjct: 1000 DRAYRIGQEKEVFVYYPTVLGDGFESFEERVAKRLATKRKLSNDMLAPE 1048