Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1161 a.a., SNF2-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (380), Expect = 4e-40
 Identities = 185/764 (24%), Positives = 308/764 (40%), Gaps = 155/764 (20%)

Query: 308  VFKHAYFGETDESGIDWF----GASPTSDLINPISKLTDRVRDKTTLEDVAKKIEDARQT 363
            V  +A++GE + +  DWF    G       +N +  L + +R      D   +     Q+
Sbjct: 484  VAANAWYGEVNSADKDWFELSLGVEVEGKRVNLLPLLVNLIRQGKLSRDF-NQATSGEQS 542

Query: 364  GATVFDYEGQSYDIS-DPAAVEKVLNEIGHKISSPNTDLSSYGEAEDAETESEGSEIHVV 422
            GA     + Q   +  +  A+  +      +I +   +L +     D E +   +  H+ 
Sbjct: 543  GANGSADQPQEVALELESGAILTLPAARIQRILAVLDELFTQQPLNDQE-KLVLARHHLG 601

Query: 423  DIDLNDEELSENSPKVEQLISDISWDGELNWENHKR-----------------------T 459
             I L D+ LS++          ++W GE     H +                       T
Sbjct: 602  RIPLLDDALSQSEQA-------LTWSGEAKLRQHAKALGRYLNEQQSRRADRLGTIDFVT 654

Query: 460  PF-------PHQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAIEHIYQRQ 512
            P        P+Q  GV W+  +++         GA+LADDMGLGKT   L +I  +  +Q
Sbjct: 655  PDGLNAELRPYQVEGVAWLQFIKRHGF------GAILADDMGLGKTLQTLCSI--LLDKQ 706

Query: 513  QISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNEYRMGGVEIRGQ 572
              +G TK P L++AP SLL NW+ E              I Q +  L  +   G   R +
Sbjct: 707  --AGVTKAPVLVIAPTSLLSNWQRE--------------IAQFTPSLTSFVWSG---RAR 747

Query: 573  SASDDCLEPKYSLKVGKYFGPSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQN 632
              ++  L              + +D+    +IT+Y  L      +  ++W  V+ DEAQ 
Sbjct: 748  HDNEQAL--------------TDVDV----LITSYGILAQDAERLTKLNWHQVILDEAQT 789

Query: 633  IKNPNALQTRAAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISP 692
            IKN  +  T+    L+   +L  TGTP+EN L + W L     PG LG+  +F+ ++  P
Sbjct: 790  IKNSRSRITKLVNRLQTQHRLCLTGTPMENHLGELWSLFHFLMPGFLGTATQFQRQFKQP 849

Query: 693  ILKAAGDEVEEIRARLGRELRIAVGALMLRRIKEDNLKGLPLKHMYAGGEFENWKYLEEL 752
            I K   D  +  R RL + L       MLRR K      LP K +           L EL
Sbjct: 850  IEK---DHCDASRQRLAQRL----APFMLRRTKSQVATELPTKTVI--------NTLIEL 894

Query: 753  KSTMVGYQRDVYEG-----AISHQLENEESHA-------LTTLMRLRDSSLHPRLSDGGR 800
              +    Q D+YE      A   QL   ++ A          L++LR    HP + + G+
Sbjct: 895  SQS----QSDLYETIRLTVAEQVQLALRQTGAKANRLMISNALLKLRQVCCHPAMLNLGQ 950

Query: 801  LDIPKNAKSARALYGESGKLVSLLETLDRVRSK--QEKCIIFAVNKRLQSFLSVTLGQIY 858
            L      ++++        L   +  LD  + +   E   +  +  +L S +      + 
Sbjct: 951  LGQVGETENSKVAISPEVNLSQSVTGLDGAQDELNAESSKLAWLENKLPSMIEDGRNILI 1010

Query: 859  NLGPLSVINGDAKAVAKRK--------SVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLT 910
                 S+++  A+ + +++            R  +I  F   E  N+ ++S  A G GL 
Sbjct: 1011 FSSFTSMLDLIAEQLERQQIGYEMLTGRSRHRDRIIERFRRGE-VNVFLISLKAGGSGLN 1069

Query: 911  VVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQ 970
            +  A+ V+H++ +WNPA E QA+DR YRIGQ+K V +Y  +  +    + +  + +L   
Sbjct: 1070 LTEADVVIHVDPWWNPAAEEQASDRAYRIGQDKPVFVYKLICQN----TVEERIQQLQQS 1125

Query: 971  KTLLKDAVVTPEDVIPQPAGVGGVVSGDLIDKRITAAELDKLSW 1014
            K  L  ++   E                     +TAAE+D+  W
Sbjct: 1126 KQALAQSMYQTES--------------------LTAAEMDRDDW 1149