Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1070 a.a., Snf2 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (353), Expect = 5e-37
 Identities = 142/528 (26%), Positives = 222/528 (42%), Gaps = 84/528 (15%)

Query: 426  LNDEELSENSPKVEQLISDISWDGELNWENHKRTPFPHQDIGVRWILGVEQKSLSDSKVS 485
            LN E + + + K+EQ    ++       +   R   P+Q  G+ W+  +++  L      
Sbjct: 575  LNGERVRQLAAKLEQFTGVVAVTAPTQLQAELR---PYQQQGLNWLCFLKEYQL------ 625

Query: 486  GALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTFKHS 545
            G +LADDMGLGKT   L+ +    Q +  +G    P+LI+ P SL+ NW  E  K     
Sbjct: 626  GGILADDMGLGKTIQTLAFLLKQKQLKSAAGP-HLPSLIICPTSLVGNWAKEAAK----- 679

Query: 546  PFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEPKYSLKV--GKYFGPSRLDLPE-RL 602
                                               P  +L V  G   GP    L E  +
Sbjct: 680  ---------------------------------FAPSLTLAVIHGAQRGPLLARLSEFDV 706

Query: 603  VITTYQTL-RDYQFSMCLIDWGIVVFDEAQNIKNPNALQTRAAKGLKADFKLVATGTPVE 661
            V+TTY  + RD  +      +  +V DEAQ IKN  A  ++  K L++ FKL  TGTP+E
Sbjct: 707  VVTTYPLMVRDNDYYQAQA-FEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLE 765

Query: 662  NSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALML 721
            N L +   LMD   PG LG+   F   + + I +    E  ++       L   +   +L
Sbjct: 766  NHLGELKSLMDFCLPGLLGTTAYFNKEFRNRIERYGDSEQVKV-------LSQRIAPFVL 818

Query: 722  RRIKEDNLKGLPLK-HMYAGGEFENWKYLEELKSTMVGYQRDVYEGAISHQLENEESHAL 780
            RR K + +  LP K  +Y   E E        +S  +  ++ + E   +  +       L
Sbjct: 819  RRTKAEVVTELPPKTEIYQSLELEK-DQRNLYESIRLSMEKKIRELFATQGVAGSHIEFL 877

Query: 781  TTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETLDRVRSKQEKCIIF 840
              L++LR +   PRL    +L+  +  K+       + KL  L + L  +  +  K +IF
Sbjct: 878  DALLKLRQACCDPRLV---KLEQAQKVKN-------NAKLNWLSQNLPEMVQEGRKILIF 927

Query: 841  AVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMISDFEAKEGFNLIVM 900
            +       F S+ +     L  L +         + + V   K    D        + ++
Sbjct: 928  S------QFTSMLILIEELLQSLEIDYSKLTGQTRLRQVQIDKFQEGDTP------VFLI 975

Query: 901  SPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIY 948
            S  A G GL +  A+ V+H + +WNPA E QATDR +RIGQE  V +Y
Sbjct: 976  SLKAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVY 1023