Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1027 a.a., Snf2 family helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  139 bits (349), Expect = 2e-36
 Identities = 151/652 (23%), Positives = 263/652 (40%), Gaps = 112/652 (17%)

Query: 391  GHKISSPNTDLSSYGEAEDAETESE-GSEIHVVDIDLNDEELSENSPK---VEQLISDIS 446
            G  I  P    S YG   +  T++E G  +    +      L EN PK    ++ I ++ 
Sbjct: 420  GRMILLPEEWFSKYGNLLELGTQTETGIRLKPTFVGAVQSALEENGPKNLLFKREIRNVP 479

Query: 447  WDGELNWENHKRTPFPHQDIGVRWILGVEQKSLSDSKVSGALLADDMGLGKTFMALSAIE 506
                LN +       P+Q  G  W++ + ++        G  LADDMGLGKT   L+ ++
Sbjct: 480  VPQGLNAKLR-----PYQQKGFSWMVQLNKQGF------GGCLADDMGLGKTLQTLTLLQ 528

Query: 507  HIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKDVV--------------- 551
            +IY+       T     +    +  ++  D+ + T  + P ++ +               
Sbjct: 529  YIYKPLSPDAVTAPMKPVFTETTASDSQPDK-ECTANNPPVREQIADAEGQFSLFSFSSE 587

Query: 552  --ILQSSAELNEYRMGGVEIRGQSASDDCLEPK--------------------YSLKVGK 589
              +L  + E+ E      +   Q    +  +P                      +L + +
Sbjct: 588  DELLPDAREIREKNRPKEDDHRQEHGKNSRKPATLIVVPTSLLHNWRREAKRFTTLAIAE 647

Query: 590  YFG--------PSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQT 641
            Y          P +      L+ TTY  +R+    +    +  +V DE+QNIKN ++L  
Sbjct: 648  YNSNTAFPKGHPEKFFNHFHLIFTTYGMMRNNIDILRSYTFEYIVLDESQNIKNNDSLTF 707

Query: 642  RAAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEV 701
            R+   L+   ++  TGTP+ENSL D W       P  LG    F  ++I PI +      
Sbjct: 708  RSVIQLQGKHRIALTGTPIENSLKDLWAQFRFLQPDLLGEESTFHKQFIIPIRQG----- 762

Query: 702  EEIRARLGRELRIAVGALMLRRIKED---NLKGLPLKHMYAGGEFENWKYLEELKSTMVG 758
                 R+ + L+  +   +LRR K +    L  L  + +Y     +  +  E+ K+++  
Sbjct: 763  ---NVRMEKRLQQIIAPFILRRSKSEVAPELPPLTEETIYCAMSEKQGESYEQEKNSL-- 817

Query: 759  YQRDVYEGAISHQLENEESH----ALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALY 814
                     +  Q EN++ +     L  ++RLR  + HP+L        P          
Sbjct: 818  ------RNILLQQPENKDRYHMFSILNGILRLRQLACHPQLI------FPD-------FD 858

Query: 815  GESGKLVSLLETLDRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVA 874
            G SGK   +++T D +RS+  K +IF+   R    L+    Q              K   
Sbjct: 859  GVSGKTEQIIDTFDTLRSEGHKVLIFSSFVRHLEILAEVFRQ-----------RGWKYAL 907

Query: 875  KRKSVPTRKSMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATD 934
               S   R S I+ F  ++     ++S  A GVGL +  A++V  ++ +WNPA E+QA  
Sbjct: 908  LTGSTNNRPSEIAHFTEQKDVQAFLISLKAGGVGLNLTQADYVFIIDPWWNPAAESQAIA 967

Query: 935  RVYRIGQEKEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVVTPEDVIP 986
            R +RIGQ+K+V  Y  +  +    S +  + +L   K  L +  +T  + +P
Sbjct: 968  RAHRIGQDKQVIAYRFITQN----SIEEKILQLQEDKRRLAETFITDSEALP 1015