Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., SNF2-related protein (RefSeq) from Shewanella sp. ANA-3

 Score = 1238 bits (3202), Expect = 0.0
 Identities = 642/1145 (56%), Positives = 816/1145 (71%), Gaps = 10/1145 (0%)

Query: 7    ISKFFSSSDKTSQFEL-ICDDSLDFATSRKTLEKIKAGKADEWITAQYVALKMLEEQGDV 65
            IS  FSS +   +F   I  +S+DF    K  + IK G AD+++TAQY+AL+ML E+G  
Sbjct: 5    ISSLFSSRNTKFKFSYDITKNSIDFYCPEKQFQDIKKGDADDFLTAQYIALQMLAEEGSA 64

Query: 66   SSFPDGFIMPADTAVRLDSELRDLFSLPPVWKGVIDADIQGKASTPTFKIDLSVTTKQGR 125
             S P+GFI+       LD ++  L +LP +W G  + DI+G     +F + + V    GR
Sbjct: 65   ESIPNGFIVKHQVIAALDEDVHQLLNLPEIWNGQANVDIRGTTFEGSFDVTIHVDAPSGR 124

Query: 126  TTLNYTVDGPFIRFSQNEQYLLTPEQLMVFIAHKTHVRSDRSEYDNLLYLHSLQEAQKNG 185
             T  Y VDG  I F  N Q+ L      VF A K H  S ++E +NLL LH+ Q+AQ+ G
Sbjct: 125  MTSAYQVDGSIISFG-NAQFTLKKVMFDVFSALKFHKESSKNESENLLLLHTFQQAQRAG 183

Query: 186  CKLNLKHFERLRILTPNKITVEAELNSQGELILTPNMGQSASHESIQKVLGQLQSDNAVT 245
             KL+L HF +L I  P+KITVEAEL+S G LILTP MGQ A H+S+Q+VLGQ+QS+   T
Sbjct: 184  AKLSLNHFNKLDIHVPDKITVEAELDSVGNLILTPQMGQKADHDSLQRVLGQIQSERGRT 243

Query: 246  LKVGDEIVLFSEEKLMAVKEVISNRVIPQQQVKAFLENPTAYIDASLVDLDLGFSIRVHG 305
            LKVG+EI+LF+E+   A KE+ISNR IP+ QVK FLE P AY+DASL+DLD+GFS+RV G
Sbjct: 244  LKVGNEIILFNEKTAKAAKEIISNRTIPKSQVKNFLEAPGAYLDASLIDLDVGFSLRVKG 303

Query: 306  ATVFKHAYFGETDESGIDWFGASPTSDLINPISKLTDRVRDKTTLEDVAKKIEDARQTGA 365
            AT FKHAYFGETDESGIDWFG S  S  I PIS +   ++       + K + DA+ TGA
Sbjct: 304  ATRFKHAYFGETDESGIDWFGQSQASSQILPISSVIKEIKTDDDRLQLTKILNDAKATGA 363

Query: 366  TVFDYEGQSYDISDPAAVEKVLNEIGHK-ISSPNTDLSSYGEAEDAE--TESEGSEIHVV 422
            T   +EG++YDI   + V +VL +I  K I   NT+     +  +A    ES+ S I V+
Sbjct: 364  TEVKFEGKNYDIGSDSEVYEVLKKIEQKLIQQENTETDEGRDNTEAPGPQESDDSPI-VI 422

Query: 423  DIDLNDEELSENSPKVEQLISDISWDGELNWENHKRTPFPHQDIGVRWILGVEQKSLSDS 482
            DI LNDEEL   S  VE+ ++++ +   ++W+N++R PFPHQ IGV+WILG+E+ + S  
Sbjct: 423  DIALNDEELDSPSKLVEEELNNVLYSQGISWDNYRREPFPHQIIGVKWILGLEEIARSKE 482

Query: 483  KVSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTF 542
             V+GALLADDMGLGKTFM+L+AIE  Y   + +G+  +P LIVAPLSLLENWKDEV +TF
Sbjct: 483  LVNGALLADDMGLGKTFMSLAAIEQYYCICEENGDVCRPTLIVAPLSLLENWKDEVAETF 542

Query: 543  KHSPFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEPKYSLKVGKYFGPSRLDLPERL 602
              SPFKD+VILQS  ELN +R GG+E +  +  D+  +P+YSLK G+  G +RLDLP RL
Sbjct: 543  HKSPFKDIVILQSDGELNSFRDGGIETKASNIDDESFKPRYSLKFGEQHGAARLDLPCRL 602

Query: 603  VITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTRAAKGLKADFKLVATGTPVEN 662
            VITTYQTLRDYQFS+  IDWGIVVFDEAQNIKNPNALQTRAAKGLKA FKL+ATGTPVEN
Sbjct: 603  VITTYQTLRDYQFSLSQIDWGIVVFDEAQNIKNPNALQTRAAKGLKARFKLLATGTPVEN 662

Query: 663  SLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALMLR 722
            SLADFWCLMDTACPG L SYQ FR  YISPIL+AAGDE+E +RA LGR+LR  VGALMLR
Sbjct: 663  SLADFWCLMDTACPGFLDSYQSFRHTYISPILQAAGDEIESVRASLGRKLREKVGALMLR 722

Query: 723  RIKEDNLKGLPLKHMYAGGEFENWKYLEELKSTMVGYQRDVYEGAISHQLENEESHALTT 782
            R+KEDNL+ LP K+M+ G E   W+Y  +L S M  YQ+ VYEG+I  QLENEESH LTT
Sbjct: 723  RVKEDNLERLPKKNMFVGLEPTEWQYEPKLHSIMDSYQQKVYEGSIESQLENEESHVLTT 782

Query: 783  LMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETLDRVRSKQEKCIIFAV 842
            LMR+RD+SLHPRL+DGGRLD P +    + ++ ES KL  ++E L  ++S++EKCIIFA+
Sbjct: 783  LMRMRDTSLHPRLADGGRLDAPSSKNDLKQIFAESAKLKKMIEVLTDIQSRREKCIIFAI 842

Query: 843  NKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMISDFEAKEGFNLIVMSP 902
            NKRLQ FLS+ LG  + LGPL VINGD KAV K K+   RKSMI++FEAKEGFNLI+ SP
Sbjct: 843  NKRLQRFLSIALGNYFGLGPLHVINGDTKAVVKNKNTANRKSMIAEFEAKEGFNLIIFSP 902

Query: 903  VAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIYIPLLHHPEFESFDV 962
            VAAGVGLTVVGAN+VVH ER+WNPAKEAQATDRVYRIGQ K+V++Y+P+LHHP  ESFDV
Sbjct: 903  VAAGVGLTVVGANNVVHFERHWNPAKEAQATDRVYRIGQTKDVNVYVPILHHPTIESFDV 962

Query: 963  NLHRLLTQKTLLKDAVVTPEDVIPQPAGVG-GVVSGDLIDKRITAAELDKLSWQQFEALC 1021
            NLHRLL+QK++LKDAVVT  +V+P PAG     ++ D I   I + ++ +LSW+QFEA C
Sbjct: 963  NLHRLLSQKSMLKDAVVTQGEVMPNPAGADKHQLTADSI---INSEDIPRLSWKQFEAFC 1019

Query: 1022 VELLAKITDSESAWLTNNGADHGADGVLLNNSGNILLQAKFTQRQYDGYKGIQEIHSAKP 1081
            VELL+K  +++SAWLT  G D GADG+L++    ILLQAK  Q  Y G+  +QEI +AK 
Sbjct: 1020 VELLSKEFNADSAWLTKEGPDFGADGLLISGQEAILLQAKHKQGSYKGHNAVQEISNAKA 1079

Query: 1082 IYESAMRSSFGRLIFVTNSPLLAKRTHEIAATCGIEVLGRTQLLTYLEEYDITLKDILSR 1141
            +Y   +    G+ IF+TN+  LAK T EIA    + ++    L    + + I+   +L+R
Sbjct: 1080 MYGKHLGRPIGKQIFITNATQLAKSTREIAQELSVIIIDGNDLSDLCQCHRISFAQVLNR 1139

Query: 1142 LGKDR 1146
            L K R
Sbjct: 1140 LSKQR 1144