Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., Integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  142 bits (357), Expect = 2e-38
 Identities = 121/414 (29%), Positives = 183/414 (44%), Gaps = 51/414 (12%)

Query: 12  TAKPKDKLYR------LSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSL 65
           T K  +K+ R       +DGG LY  +  +   SW FRYK  G+ +   +  G + ++SL
Sbjct: 5   TTKAVEKIVRSGSPGMTNDGGGLYLKLGRTGGASWIFRYKLAGKSRD--MGLGKHSEVSL 62

Query: 66  AEAREKALEARKQLADGIDP------------------QLAKEEQKAKTITEQNATFKFV 107
           A AREKA EARK    G+DP                  +LA++  KAK  T +     ++
Sbjct: 63  AVAREKAAEARKLSKSGVDPLTSRDEEMERHRLEKEAERLAQDAAKAKATTFKEVALDYI 122

Query: 108 AEQ---WKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGL 164
           A     WK  K  Q  E TL         YAF  +G +P  ++     +  L+PI +  +
Sbjct: 123 AAHRTGWKNAKHAQQWENTLA-------TYAFKVIGDLPTQEIGIEHVLKILKPIWTV-I 174

Query: 165 LETVKRTAQLMNEIMNYAVNSGVIHANPLAGIRDVFKK--------HKVVHMKALQPHEM 216
            ET  R    +  +++ A   G+      A  R    K          V H  A+   E+
Sbjct: 175 PETASRLRNRIELVLDAAKARGLRDGENPARWRGHLDKLLPPRAKVRAVKHHAAMSWTEL 234

Query: 217 HDLIRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNRE 276
              +  +  A  + ++   + + + T  R +E   + W EID+  K+W IP  RMK  +E
Sbjct: 235 PAFMAPLEKA--EDLSSKALRFTILTACRTSEVLESTWAEIDVAAKVWTIPALRMKAGKE 292

Query: 277 HVVPLTAQTLAILEAIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGL 336
           H VPL+   L +L  +  I G+   +F  +R  K P  +      L RM  +D  T HG 
Sbjct: 293 HRVPLSKAALDLLAGLPRIKGNNH-LFAGARK-KRPLSNMAMLMTLRRMK-RDDLTTHGF 349

Query: 337 RALASTTLNEQGFEP-DVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEH 389
           R+      +E    P +V E ALAHT +N +  AY R D  + RR LM  W+ +
Sbjct: 350 RSTFRDWASEVTHYPREVCEQALAHTVENAVEAAYRRGDLFEKRRILMEDWARY 403