Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Phage integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  415 bits (1067), Expect = e-120
 Identities = 204/400 (51%), Positives = 275/400 (68%)

Query: 2   ANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYP 61
           A  L+ RQ++  K   K + LSDG  L   VR S S  W F Y+ P       ++ G YP
Sbjct: 5   ATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRINMALGPYP 64

Query: 62  DMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKE 121
           D+SLA AR+KA+EAR+ LA GIDP+  ++E +   + E   TF+ VA  W   K+  + +
Sbjct: 65  DLSLANARKKAVEARELLALGIDPKAQRDEVRHAKLAETEHTFEKVATAWFELKKDSVTK 124

Query: 122 KTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNY 181
              E  WR L L+  P + + P+S++TAPM I  LRPIE++G LETVKR +Q +NEIM Y
Sbjct: 125 AYGEDIWRSLTLHVLPSMKTTPLSQITAPMVIKILRPIEAKGSLETVKRLSQRLNEIMTY 184

Query: 182 AVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLH 241
            VNSG+I ANPL GIR VFKK K  +M AL P E+ +L+  +A A+I+  TR LIEWQLH
Sbjct: 185 GVNSGLIFANPLNGIRAVFKKPKKENMAALPPEELPELMMEIANASIKRTTRCLIEWQLH 244

Query: 242 TMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREF 301
           TM RP EA+  RW +ID   ++W IP ERMK  R H +PLT Q LA+LE +K +SG+RE+
Sbjct: 245 TMTRPAEAATTRWADIDFNKRIWTIPPERMKKRRPHTIPLTDQALALLETLKQLSGNREY 304

Query: 302 IFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHT 361
           +FPS RNP+   +S+TAN AL RMGF+DR  +HGLR++AST LNE G++P++IE ALAH 
Sbjct: 305 VFPSDRNPRTHANSQTANMALKRMGFQDRLVSHGLRSMASTILNEHGWDPELIEVALAHV 364

Query: 362 DKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVA 401
           DK+++R AYNRTDY++ RR +M+WWSEHI+K++ GS S +
Sbjct: 365 DKDEVRSAYNRTDYIERRRPMMAWWSEHIQKAAIGSLSAS 404