Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., Integrase from Pseudomonas fluorescens FW300-N2E2

 Score =  211 bits (538), Expect = 3e-59
 Identities = 127/403 (31%), Positives = 203/403 (50%), Gaps = 17/403 (4%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  + + AKP+ K Y L DG  L+  VR + ++ W+F+YK+P   K    +FG YP + 
Sbjct: 8   LTDPKCEAAKPRAKDYTLFDGQGLFLLVRATGTKVWRFKYKKPS-GKPGLATFGNYPALG 66

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L  AR +  +A + LA G DP  + ++ K +   E   TF+ +A +W A+  G+  +   
Sbjct: 67  LKAARARRADALELLAHGQDPIESAKQAKIEAANEAGNTFEALALEWHASMAGKWSKDHA 126

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
               +++E+  FP LG  PVS L     +A L+ +E +G L+ V R  Q +  IM  AV 
Sbjct: 127 VRVLKEIEVDLFPMLGKRPVSDLKTRDLLACLKTVEKRGALDVVGRLRQRIAGIMRIAVQ 186

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
              I  NP   +       K  H  AL    + +L++       + +T   +   L   +
Sbjct: 187 RNFIVYNPALDLVGGTATRKTKHRPALPLERLPELLQRCEADTGRPLTCLAVSLALLVFI 246

Query: 245 RPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAI 292
           R +E   ARW E D    +W IP ER             KM   H+VPL+ QTL +LE I
Sbjct: 247 RSSELRFARWSEFDFTRSMWTIPGERAPIEGVKRSHRGAKMGTPHLVPLSRQTLEVLEQI 306

Query: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTTLNEQG-F 349
           + +SG  + + P       P    T NK+L RMG+  K     HG R +A + L E G +
Sbjct: 307 RRLSGRFDLVLPGDHYYWRPMSENTVNKSLRRMGYDTKIEVCGHGFRTMACSALVESGLW 366

Query: 350 EPDVIEAALAHTDKNQIRKAY-NRTDYLDSRRKLMSWWSEHIE 391
             D +E  ++H ++N +R AY ++ ++L+ RR +M+WW+++++
Sbjct: 367 SRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMMTWWADYLD 409