Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., integrase, putative from Pseudomonas fluorescens FW300-N2E2

 Score =  136 bits (343), Expect = 1e-36
 Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 12/370 (3%)

Query: 32  VRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEARKQLADGIDPQLAKEE 91
           V  S S+ W+ +Y+  G++     S G YPD+ L EAR+ A  AR+ +A+   P  AK  
Sbjct: 45  VGKSPSKVWRLKYRLHGKEN--RFSIGAYPDIGLKEARDIARGARRDVANHTAPLKAKTA 102

Query: 92  QKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFPKLGSIPVSKLTAPM 151
           +    +  +  TF +VAEQW A K  ++  K++ G    L  +  P +G  P+S++    
Sbjct: 103 KIEAQLLNEERTFAYVAEQWLAFKSAELVTKSISGFTGALNNHILPAIGKKPISEIKLEH 162

Query: 152 AIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHAN-PLAGIRDVFKKHKVVHMKA 210
               +  +  Q  +   +R   ++  ++ +A   G +  N  L+ I ++  +H V    A
Sbjct: 163 ITTIITELRRQRTMAMARRVRTIIRAVLGFAEGRGWVERNVALSNIEELKIRHIVTSNPA 222

Query: 211 LQ-PHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLW--IIP 267
           ++ P ++   +  +   N   V    +   +   VRP E    RWE++D+V   W  ++ 
Sbjct: 223 IERPSDLGRFLLRLDDCNDGSVAT-AMRLLVMLPVRPGELVQMRWEDVDLVGADWRYVVS 281

Query: 268 KERMKMNREHVVPLTAQTLAILEAIKPI----SGHREFIFPSSRNPKVPTDSETANKALG 323
           K +     +H+VPL  Q L +L  +          + ++F S   P  P +  +  K+  
Sbjct: 282 KTKHLDKSKHIVPLPEQALVLLRELHKTRVVDEEGKGWVFVSPVYPGRPINPTSMLKSFQ 341

Query: 324 RMGFKDRTTAHGLRALASTTLNEQ-GFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKL 382
           R+  +   TAHG RA   T  +E  G +P V+E +L+H     +   Y R   L  RR+ 
Sbjct: 342 RIWPEYDITAHGFRATYRTIAHEHLGIDPIVLELSLSHRMPGALGAVYARAQLLVQRREA 401

Query: 383 MSWWSEHIEK 392
              W++++++
Sbjct: 402 AQQWADYLDQ 411