Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  247 bits (630), Expect = 5e-70
 Identities = 132/388 (34%), Positives = 209/388 (53%), Gaps = 2/388 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LTA Q+++A P+   Y L+DGG L+  +R +  +SW+FR++  G  K +++S GT   ++
Sbjct: 3   LTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFRLDG--KQSHISLGTIDKVT 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AR+ A +AR+ +A G  P L ++  +A+    +  TFK +A +W   K  +      
Sbjct: 61  LAQARQLASDARQLVAQGRHPGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYA 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
                  EL  FP++GS+P++ +     +   R IES+G LE +++  Q   E+  +A+ 
Sbjct: 121 GDVVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIA 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP+A I    +     H   L   E+  LIR++       V +      + T V
Sbjct: 181 TGRAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLILTGV 240

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R  E  G  W E D+   LW+IP  RMKM R H+VPL+ Q +A+L  ++ I+G     FP
Sbjct: 241 RTAELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGGYTLAFP 300

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
              +P  P      N+ L R G+  R T HG R   STTL+EQG+  + +E  LAH DKN
Sbjct: 301 GRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAHVDKN 360

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
            IR  YN   YL+ RR+++ W++ H+++
Sbjct: 361 SIRGTYNHAQYLEGRREMLQWYANHVDE 388