Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  166 bits (420), Expect = 1e-45
 Identities = 127/404 (31%), Positives = 202/404 (50%), Gaps = 29/404 (7%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPG-QDKITYLSFGTYPDM 63
           LT  +++  KP+DKLY+++D   LY  V  S S S+++ Y   G Q+ IT+  +G    +
Sbjct: 2   LTDTKLRNLKPRDKLYKVNDRDGLYVAVTVSGSISFRYNYAIHGRQETITFGRYGV-GGI 60

Query: 64  SLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKT 123
           +LAEARE+  EA+K +A G  P  AKE+ + K   +   TF   AE+W   +  Q+ E T
Sbjct: 61  TLAEARERLGEAKKMIAAGKSP--AKEKARDKARVKDAETFGAWAEKW--LRGYQMAEST 116

Query: 124 LEGN----WRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIM 179
            +      +R+L+     K G+  + ++T     A    I  +G   T     +++ ++ 
Sbjct: 117 RDMRRSIYFRELK----SKFGNQKLVEITHEDLRALTDAIVERGAPATAVHVREVVFQVY 172

Query: 180 NYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHE---MHDLIRTVATANIQHVTRFLI 236
            +A+  G    NP   +R           +AL P E   M+  +  V TA        L+
Sbjct: 173 RWAIERGQKVENPAELVRPTTIARFEPRDRALTPDEIGLMYQYVERVGTAPSFRAAAKLL 232

Query: 237 EWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPIS 296
              L TMVR +E + A W E++    LW IPKERMK    H+V L+ Q L I  A+K  +
Sbjct: 233 ---LLTMVRKSELTKATWSEVNFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFA 289

Query: 297 GHREFIFPSSRNPKVPTDSETANKALG---RMGFKD-----RTTAHGLRALASTTLNEQG 348
           G  +++ PS  +   P  S T N+ L    ++  K+     +   H LR  AST L+E G
Sbjct: 290 GGSDYVLPSRYDSDAPMSSATLNQVLTLTYKLAQKEGKPLAKFGPHDLRRTASTLLHEAG 349

Query: 349 FEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEK 392
           +  D IE  LAH ++  +R  YN+ +Y D R ++M  W++ I++
Sbjct: 350 YNTDWIEKCLAH-EQRGVRAVYNKAEYRDQRVEMMQDWADMIDE 392