Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., DUF4102 domain-containing protein from Pseudomonas fluorescens SBW25-INTG

 Score =  222 bits (566), Expect = 1e-62
 Identities = 130/391 (33%), Positives = 205/391 (52%), Gaps = 12/391 (3%)

Query: 11  QTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEARE 70
           + AKP+DK YRL D   LY  V+P+  R W+ +Y+  G++K   L+ G YP++ L EAR 
Sbjct: 9   RNAKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKYRFLGKEK--RLALGVYPEVGLQEARR 66

Query: 71  KALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRK 130
           K  +AR QLA G DP L +   K  +  +   TF+ VA QW   +E     +      ++
Sbjct: 67  KRDDARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPEYTRTVRQR 126

Query: 131 LELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHA 190
           LEL AFP LG +P+S ++ PM +  L+ I  +G  ET +R AQ+  +I  +A  +G+   
Sbjct: 127 LELNAFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFAEAAGITPP 186

Query: 191 NPLAGIRDVFKKHKVVHMKAL-QPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEA 249
           N +  +       +V H  A+  P ++  L++ + +          ++       RP + 
Sbjct: 187 NQIGNLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPLLFCRPGDL 246

Query: 250 SGARWEEIDMVNKLWIIPKERMK-------MNREHVVPLTAQTLAILEAIKPISGHREFI 302
               W E+++    W+IP  +MK          +H+VPL+ Q +A+L  +KP++G   + 
Sbjct: 247 RHMEWSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKPLTGRHRYA 306

Query: 303 FPSSRNPKVPTDSETANKALGRMGFK-DRTTAHGLRALASTTLNE-QGFEPDVIEAALAH 360
           FPS+R    P  +     AL RM    D  T HG RA A T   E  GF PD++E  LAH
Sbjct: 307 FPSARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPDLLEHQLAH 366

Query: 361 TDKNQIRKAYNRTDYLDSRRKLMSWWSEHIE 391
           T KN + +AY+RT +L  RR++M  W++ ++
Sbjct: 367 TVKNPLGRAYDRTSFLPERREMMQIWADFLD 397