Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score =  416 bits (1070), Expect = e-121
 Identities = 207/397 (52%), Positives = 275/397 (69%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  QI+  KP  K   LSDGG L   VR + S+ W + Y  P   K   +  G YPD+ 
Sbjct: 8   LTNTQIKNQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGIGPYPDIP 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+ARE ALE R+ +A G+DP+  +E++  K   E   T K VA +W   K+ ++ +   
Sbjct: 68  LAKAREIALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEWLEIKKSEVTKSHA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
              W  LE + FP+LG  P++K+TAP+ I   RPIE++G LET+KR +Q +NEIMN+ VN
Sbjct: 128 AKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKRLSQRLNEIMNFGVN 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
            G I +NPL GIR  FKK K   M  L P E+  L+R ++ A+I+ VTR LIEWQLHTM 
Sbjct: 188 CGYIDSNPLVGIRAAFKKPKKESMATLTPSELPLLMRHLSQASIKRVTRCLIEWQLHTMT 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RP+EA+ ARW+E+D+ N  W IP E+MK  REHV+PLT Q L IL+AIKPISGHR++IFP
Sbjct: 248 RPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGILDAIKPISGHRDYIFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           + R+PK   +++TAN AL RMG K +  +HG+RALASTTLNEQGFE D+IEAAL+H D N
Sbjct: 308 ADRDPKSHCNTQTANVALKRMGLKGKLVSHGMRALASTTLNEQGFESDLIEAALSHVDAN 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVA 401
           Q+R AYNR+D+L+ RR +MSWWS+HIE++S G+ SV+
Sbjct: 368 QVRAAYNRSDFLERRRPMMSWWSKHIEEASQGNLSVS 404