Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  454 bits (1167), Expect = e-132
 Identities = 221/397 (55%), Positives = 290/397 (73%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L+  +I+TAKPKDK Y L+DGG L   ++P+ S+ W   Y  P   K   LS GTYPD+S
Sbjct: 8   LSDTEIKTAKPKDKEYNLADGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSLGTYPDIS 67

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L  AR+ A EAR  LA G DP+  +E Q A        TF  +A +W   K+ ++ E   
Sbjct: 68  LLSARKLAQEARTLLAHGTDPKAHREAQIAAKAAIIEHTFGKIAAEWFERKKDEVTEDHA 127

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
              WR  +L+  P L  IP+S++TAPM I  LRPIE++G LETVKR  Q +NE+M YAVN
Sbjct: 128 AATWRSFKLHLLPSLKDIPISQITAPMVIEFLRPIEAKGNLETVKRLTQRLNEVMIYAVN 187

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G+IHANPL+GI+ +FKK +  H+ AL+P E+ +L++ +A A+I+ VTRFLIEWQLHTM 
Sbjct: 188 TGLIHANPLSGIKAIFKKPRKEHLAALKPDELPELMQAIANASIKKVTRFLIEWQLHTMT 247

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           RPNEA+ ARW+EI+   ++W+IP  RMKM R+H +PLT QTLA+L AIKPISGHRE+IFP
Sbjct: 248 RPNEAAAARWDEINFDERIWLIPAARMKMRRDHQIPLTEQTLALLAAIKPISGHREYIFP 307

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
           + R+PK  ++ +TAN AL RMG KDRTTAHG R+LASTTLNEQGF+PDVIEAALAHTDKN
Sbjct: 308 ADRDPKTHSNVQTANAALKRMGLKDRTTAHGFRSLASTTLNEQGFDPDVIEAALAHTDKN 367

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSVA 401
           Q+R AYNR+ YLD RR++M+WWS +I +++ G+ S+A
Sbjct: 368 QVRSAYNRSIYLDRRREMMTWWSNYIVEAAKGNVSLA 404