Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., hypothetical protein from Klebsiella michiganensis M5al

 Score =  150 bits (380), Expect = 5e-41
 Identities = 123/410 (30%), Positives = 186/410 (45%), Gaps = 37/410 (9%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRS----WQFRYKRPGQDKITYLSFGTY 60
           LT  + +  KP DK   L  GG +   + P+ +      W FRY  P   K    S GTY
Sbjct: 4   LTDTKARHIKPGDKA--LPHGGVIGLTLNPTRANKGRGYWIFRYVSPVTQKRRQASLGTY 61

Query: 61  PDMSLAEAREKALEARKQLADGIDP------QLAKEEQKAKTITEQNATFKF---VAEQW 111
           P++S+AE  + A   R+QLA  IDP      Q   E++KA   T Q+A       +   W
Sbjct: 62  PEISIAEVGKIASAMREQLAKNIDPLEEKSIQQQNEKRKASIPTFQSAAETLHPTLLPGW 121

Query: 112 KATKEGQIKEKTLEGNW-RKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKR 170
           K  K G+         W   L+ +AFP LG   +  + A      L PI       T KR
Sbjct: 122 KNIKHGK--------QWITTLQTHAFPILGVKTLDTINAADIAEILSPIWLSHPA-TAKR 172

Query: 171 TAQLMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQH 230
             Q +  +M + +  G    NP+  +  +  +   +  +A     M      +  AN  H
Sbjct: 173 VKQRIYTVMEWGLAQGYCKINPVDVVAHLLPQQNKLATRARHFPAMPWKAIPLFFANHLH 232

Query: 231 ------VTRFLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQ 284
                 V+R L+   + T  R  E    RW EI+   ++W IP E+MK   +H VPLT Q
Sbjct: 233 SDNAYDVSRALLAIVILTACRSGEVRAMRWCEINEKQQIWTIPPEKMKGGIQHRVPLTNQ 292

Query: 285 TLAILEAIKPISGHREFIFPSSRNPKVPTDSETAN---KALGRMGFKDRT-TAHGLRALA 340
            + I+  +K    H++ +FPS R   V +D    +   +        DR  TAHG R+  
Sbjct: 293 AIKIILKMK--GRHKDLVFPSVRKQTVLSDMALTSFLRRVEASSDIPDRVATAHGFRSSF 350

Query: 341 STTLNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHI 390
               +E G+  D+ E ALAH  ++++  AY+RTD L+ RR +M  W++++
Sbjct: 351 RDWCSEHGYSRDLAERALAHAIQSKVEAAYHRTDLLEQRRPMMQAWADYV 400