Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., putative site specific integrase from Klebsiella michiganensis M5al

 Score =  244 bits (624), Expect = 2e-69
 Identities = 127/386 (32%), Positives = 207/386 (53%), Gaps = 2/386 (0%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L   QI+ AKP+ K Y L DG  L   + P+ S+SW+FRY+  G+ K+  +S G YP ++
Sbjct: 3   LNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKM--ISLGVYPTIT 60

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AR +  +ARK +A+G +P   ++EQK    TE  + F+ +A +W   K  +      
Sbjct: 61  LADARSRRDDARKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAGYA 120

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
                  +   FP +G+ P+ ++     +  LR IE +G LE +++  Q  +E+  YA+ 
Sbjct: 121 SDIMEAFQNDIFPYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA 180

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +G    NP A +    + H+  H   L+  E+ D +R + +     + +   +  + T V
Sbjct: 181 TGRAEFNPAADLSSALEVHQSNHFPFLKADELPDFLRALHSYTGSRLVQIATKLLMITGV 240

Query: 245 RPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
           R  E   A W E D+ N +W IP ERMKM R H+VPL+ Q L +L  +K ++G+  ++FP
Sbjct: 241 RTIELRAALWSEFDLDNAIWEIPAERMKMRRSHLVPLSTQALDLLNELKMMTGNYRYVFP 300

Query: 305 SSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTDKN 364
              +P  P    + N+ + R+G+  + T HG R   ST L++Q +    IE  LAH DKN
Sbjct: 301 GRNDPNKPMSEASINQVIKRIGYGGKVTGHGFRHTMSTILHDQNYNSAWIEIQLAHIDKN 360

Query: 365 QIRKAYNRTDYLDSRRKLMSWWSEHI 390
            IR  YN  +Y+  R+++M  ++  I
Sbjct: 361 YIRGTYNHANYISQRKEMMQVYANMI 386