Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., prophage P4 integrase from Klebsiella michiganensis M5al

 Score =  214 bits (544), Expect = 5e-60
 Identities = 129/396 (32%), Positives = 204/396 (51%), Gaps = 26/396 (6%)

Query: 17  DKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEAR 76
           +K  RLSDG  LY  ++ + S  W+ RY+  G+D++  +S G Y  + LA AREK  E +
Sbjct: 26  EKDSRLSDGSGLYLLIKSNGSAYWRLRYRFNGEDRL--ISLGEYKYIPLALAREKREEVK 83

Query: 77  KQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAF 136
           + +A GIDP+  K+E       E   TF+ VA QW A+     KE +     + L    F
Sbjct: 84  RNIARGIDPRGTKDE-------EGFLTFREVAMQWHASNRQWSKEHSRR-ILKSLLDEVF 135

Query: 137 PKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVIHANPLAGI 196
           P  G   +  L     +  ++ ++  G LE   R  Q +N +M  AV++G++  NP+A  
Sbjct: 136 PVFGDDNIKLLKTQDLLKPVKQVQDSGRLELASRIYQRINSVMTLAVDNGLLEFNPIAHK 195

Query: 197 RDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRPNEASGARWEE 256
                K    H  AL+   + + ++ +     + +T+  + + LHT VR +E   ARW+E
Sbjct: 196 SGALIKRNSEHRAALELENIPEFLKRIEKFKGRRLTQLAMTFLLHTFVRSSELRFARWKE 255

Query: 257 IDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAIKPISGHREFIFP 304
            D+ N LW IP  R             KM   H+VPL+ Q  +I++ IK I+G R F+F 
Sbjct: 256 FDLENSLWTIPSVREEIPGVKYSYRGSKMKTPHIVPLSHQACSIIQEIKSITGERIFVFT 315

Query: 305 SSRNPKVPTDSETANKALGRMGF--KDRTTAHGLRALASTTLNEQG-FEPDVIEAALAHT 361
           S   PK P    T N AL  MG+  K    +HG R +A + L E G +  D IE  ++H 
Sbjct: 316 SDHFPKKPMSENTINHALQSMGYDTKKDLCSHGFRTMACSALIESGKWSRDAIERQMSHQ 375

Query: 362 DKNQIRKAY-NRTDYLDSRRKLMSWWSEHIEKSSYG 396
           ++N +R AY ++ + +  R+K+M WWS+++ +  +G
Sbjct: 376 ERNNVRAAYIHKAELIPERQKMMQWWSDYLMQLQHG 411