Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., site-specific recombinase, phage integrase family protein from Klebsiella michiganensis M5al

 Score =  253 bits (647), Expect = 6e-72
 Identities = 143/409 (34%), Positives = 222/409 (54%), Gaps = 21/409 (5%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           L ARQ++TAKPKDK Y+++DGG LY  V    S+ W+ +Y+RP   K   L+FG +P ++
Sbjct: 3   LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 62

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           LA+AR K  EA+K L  GIDP+   E+++A+       TF+ +A +W A+ + +  E   
Sbjct: 63  LAQARAKRDEAKKLLVQGIDPK--AEQKEAQAENSGAYTFETIAREWHASNK-RWSEDHR 119

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
               R LELY FP +G+  + +L     +A ++ +++ G  +  +R  Q +  IM YAV 
Sbjct: 120 SRVLRYLELYIFPYIGTSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQ 179

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMV 244
           +  I +NP + +       K  H  AL      + +  +A    + +TR  +E  L T V
Sbjct: 180 NDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFV 239

Query: 245 RPNEASGARWEEIDMVNKLWIIPKER------------MKMNREHVVPLTAQTLAILEAI 292
           R +E   ARWEE D    LW +P +R            MKM  EH+VPL+ Q + +L  +
Sbjct: 240 RSSELRFARWEEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLAQL 299

Query: 293 KPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRT--TAHGLRALASTTLNEQG-F 349
           K ISG +E +FP   +        T N AL  MG+  +T    HG R +A   L E G +
Sbjct: 300 KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW 359

Query: 350 EPDVIEAALAHTDKNQIRKAYNRT-DYLDSRRKLMSWWSEHIE--KSSY 395
             D IE  L+H+++N +R AY  T ++LD RR ++ WW+++++  KS+Y
Sbjct: 360 SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDMNKSTY 408