Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  243 bits (620), Expect = 7e-69
 Identities = 139/392 (35%), Positives = 220/392 (56%), Gaps = 10/392 (2%)

Query: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64
           LT  + + AKP +K+YRL DGG +Y  V PS ++ W+ +Y+  G++K   LS G YP++ 
Sbjct: 2   LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEK--RLSLGVYPNVG 59

Query: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124
           L EAREK  E R+ +A+GIDP   +  QK     +   +F+ VA +W   +      + L
Sbjct: 60  LKEAREKRDELRRLIAEGIDPAAQRCPQKVAPTAD---SFEMVAREWMDLRSPAWAPRHL 116

Query: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184
               ++LE Y FP +G +P+ ++     + ALR +E +G +E  ++T  + +++  YAV 
Sbjct: 117 STTCQRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVA 176

Query: 185 SGVIHANPLAGIRDVFKKHKVVHMKAL-QPHEMHDLIRTVATANIQHVTRFLIEWQLHTM 243
           S  I ++P   +R   K  +  H  A+  P ++  L+R +   +   V R  + +   T 
Sbjct: 177 SARIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTF 236

Query: 244 VRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISG--HREF 301
           VRP E   A W E DM  ++W IP  +MK  REH+VPL+ Q LA+L  ++  +   +   
Sbjct: 237 VRPGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQALAVLRDVRATAPRLNSPM 296

Query: 302 IFPSSRNPKVPTDSE-TANKALGRMGFKDRT-TAHGLRALASTTLNEQGFEPDVIEAALA 359
           +F S R       SE T   AL  +G+   T TAHG RA+AS+ LN  G+ PDVIE  LA
Sbjct: 297 VFQSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYNPDVIERQLA 356

Query: 360 HTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIE 391
           H + N+IR AY+RT+YL+ R  +M  ++++++
Sbjct: 357 HIEGNKIRAAYHRTEYLEERTAMMQAYADYLD 388