Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  443 bits (1139), Expect = e-129
 Identities = 214/393 (54%), Positives = 282/393 (71%)

Query: 1   MANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTY 60
           MA  L   +++ AKP++K Y LSDG  L   VRP  S++W   Y RP   K   L+ GTY
Sbjct: 4   MAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTY 63

Query: 61  PDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIK 120
           P+++LA+AR KAL+ARK +A  IDPQ  +E Q+         TF+ VA QW   K+ +I 
Sbjct: 64  PELTLADARRKALDARKLIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTEIT 123

Query: 121 EKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMN 180
           E      WR  +L+  P +GS P+S++TAPM I   RPIE++G LETVKR  Q +NE+M 
Sbjct: 124 ENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRLTQRLNEVMT 183

Query: 181 YAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQL 240
           YAVN+G+IHANPL+GI+  FKK K   M A+ P+E+ +L+ T++ A+I+ VTR LIEWQL
Sbjct: 184 YAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIEWQL 243

Query: 241 HTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHRE 300
           HTM RPNEA+GARW+E +  ++LW IP ERMKM REHV+PL+   + IL+ +K ISGHRE
Sbjct: 244 HTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISGHRE 303

Query: 301 FIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAH 360
           ++FP+ RNPK  ++ +TAN AL RMG +DRTTAHGLRALASTTLNEQGF+ DV+EAALAH
Sbjct: 304 YLFPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAALAH 363

Query: 361 TDKNQIRKAYNRTDYLDSRRKLMSWWSEHIEKS 393
           TDKNQ+R AYNR  YL+ RR++M WWS+ I+ +
Sbjct: 364 TDKNQVRSAYNRATYLERRREMMEWWSKSIKSA 396