Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  541 bits (1394), Expect = e-158
 Identities = 265/398 (66%), Positives = 316/398 (79%), Gaps = 1/398 (0%)

Query: 3   NNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPD 62
           N LTA+ +  AK + K YRLSDGGNLY  VR +  ++W+FRY RP   K TY   G+YPD
Sbjct: 6   NKLTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGLGSYPD 64

Query: 63  MSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEK 122
           +SLAEAR+KALEARK LA+GIDPQL K E K K  TE   T K +A+ W  +K+G IK K
Sbjct: 65  VSLAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQGSIKPK 124

Query: 123 TLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYA 182
           T+EGNWRKLELYAFPKLGSI +S+LTAP+AIAAL+P+E +G LETVKRTAQL+NEIMN++
Sbjct: 125 TIEGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNEIMNFS 184

Query: 183 VNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHT 242
           VNSG IHANPL+GIR+VF+K KV H+KAL+P E+ +L++T+A AN+   TR LIEWQLHT
Sbjct: 185 VNSGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIEWQLHT 244

Query: 243 MVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFI 302
           M RPNEA+GARWEEID   KLW IP+ RMKMNREH++PLT  TL ILE +KPIS   +F+
Sbjct: 245 MTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISEQSQFV 304

Query: 303 FPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAALAHTD 362
           FPSS++P+  TD ET NKALGRMG K RTT HGLR+LASTTLNEQGF+ DVIEAALAH D
Sbjct: 305 FPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAALAHVD 364

Query: 363 KNQIRKAYNRTDYLDSRRKLMSWWSEHIEKSSYGSYSV 400
           KNQIR AYNRT YL+ R KLM WWS HI  ++ GS SV
Sbjct: 365 KNQIRSAYNRTTYLERRTKLMEWWSNHIATAAVGSLSV 402