Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1014 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  760 bits (1962), Expect = 0.0
 Identities = 414/1017 (40%), Positives = 612/1017 (60%), Gaps = 13/1017 (1%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            MD ARY++ +  ++W+L+ + L GG +++ ++GR EDPEF I+QA++   YPGATA EV 
Sbjct: 1    MDFARYSITRPVNIWILVLICLFGGILAFFEIGRLEDPEFTIKQAIVNVQYPGATALEVE 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
             +VT+ +E A+Q + ++KE++S SM G +E+ VE++  +A  +  L Q+WD+LR K+ DA
Sbjct: 61   QQVTEPLESAIQQMSQIKEIRSRSMPGIAEIRVEMQDRYAGDA--LPQIWDELRNKINDA 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATL 180
            Q  LPPG     VNDDF DVY +FYA+TG+G + K+L +    LRR L+   GV K    
Sbjct: 119  QGDLPPGIEPPQVNDDFGDVYGIFYALTGDGLTLKELHETAKDLRRALLTADGVGKVEIA 178

Query: 181  AEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSL 240
              Q+E I +E+   ++A  G++ + +   L        AG V+A +  + + P     SL
Sbjct: 179  GVQEERILVEVDQAQLAALGVAPDEIAAALADTDAAVDAGGVNAGEFFVRLRPSGAFDSL 238

Query: 241  ADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEM 300
             +L  L V  G     V LG IA +SR Y E    ++R+NGQ+A+  GIS V+G N+VE+
Sbjct: 239  EELRALPVGQGPQR--VELGAIARLSREYAERPQQIIRHNGQQALTLGISGVSGANIVEV 296

Query: 301  GDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVR 360
            G +V+A L   E + PLG DLH +  Q   V  SV +F  N+  +VAIV  VL + MG+R
Sbjct: 297  GHSVEAVLQANEHRMPLGADLHPLYEQHQIVDESVNSFALNVFLSVAIVVGVLCIAMGLR 356

Query: 361  SGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQE 420
            +G IIG VL LTV GTL VM +  I ++RISLGALIIA+GMLVDNA+VV DG+LVR +Q 
Sbjct: 357  AGFIIGAVLFLTVLGTLLVMWLVGIELERISLGALIIAMGMLVDNAVVVCDGMLVRQRQG 416

Query: 421  PNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSW 480
             +    +   + +  T+WPLLG T++GI AF+ IGLS    GE   SLF+VI  S+ LSW
Sbjct: 417  KSI--LEASQQTLRQTQWPLLGATIIGILAFAGIGLSQDTTGELLFSLFFVIAVSLLLSW 474

Query: 481  VFAVTVTPMLCHDFLRVKAPTKEAKPSKLVTG-----YKAVLQWVLSHRVVSCAMLLGTL 535
            + A+ + P+  H  LR  A T E  P     G     Y+ +   VL    ++  +LL   
Sbjct: 475  LLALLLVPLFGHYLLR-NADTDE-DPDAAYNGPWYNRYRRLAGGVLHRPWLTIGVLLVLT 532

Query: 536  VAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITS 595
            V +      +P  F P S  P F V+++LPQG+ IR T +  + +E+ + + +G++ ++S
Sbjct: 533  VVSAVIFTRLPQSFFPPSSTPLFYVNLFLPQGTHIRDTARTASDVEEYLAEMEGVSGVSS 592

Query: 596  FIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKF 655
            FIG G  RFMLTY PE  N S    L+  +D   I  LV ++  EL  +YP A +   +F
Sbjct: 593  FIGAGASRFMLTYMPEQPNSSLMHFLVRTEDAELIDRLVRQINQELPQRYPSADVTAAQF 652

Query: 656  MLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQ 715
            M G     K+EA   GPD  VLR ++ + +  + ++  +  V+DDWRQ V VL+P  +  
Sbjct: 653  MFGPNAEAKLEARISGPDIEVLRAISAEGRKRLQDEGKVFNVRDDWRQPVLVLRPQLALD 712

Query: 716  EAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSA 775
                 GLT Q ++ A+A    G+ V + RE ++LIP+++RA   +R     +    ++S 
Sbjct: 713  RLADAGLTRQAVARALAAGSEGQRVSLLRERDELIPVLLRAAPEDRVSSDDLLQRLIWSP 772

Query: 776  QAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIE 835
                Y+P++Q+ D ++   +D+++ R +R  TI ++A+P  G  T +A   +R  IE IE
Sbjct: 773  AGNGYVPLAQVADGIEPTSEDSIIVRYDRERTISIRAEPRDGENTNEAHQRIRPLIEGIE 832

Query: 836  LPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVV 895
            LP  Y L W G+Y+ S DA + LA +    + AM+L  V +F  +RQPL+IW+  P A+ 
Sbjct: 833  LPVNYSLKWGGDYEQSSDAQQALASTLAVPYLAMVLVTVLLFARVRQPLMIWLVVPMAIC 892

Query: 896  GVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSR 955
            GV+ GL+     F FMA+LG LSL GM++KNA+VLVD+ D +I        AII+A+ SR
Sbjct: 893  GVSFGLLLTGQAFGFMALLGLLSLTGMLIKNAVVLVDEIDRQIDDEVPRLTAIIEASASR 952

Query: 956  ARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRVK 1012
             RPV++ A TT+LG+ PLL DPFF +MAVTIM GL FAT+LTL+ +P  Y +  +V+
Sbjct: 953  LRPVMMAAGTTVLGMVPLLFDPFFANMAVTIMGGLGFATLLTLLAVPCLYLLFMKVR 1009