Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  525 bits (1352), Expect = e-153
 Identities = 314/1028 (30%), Positives = 543/1028 (52%), Gaps = 21/1028 (2%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++ + L  R  V  L+ L  I G +SY KLG+ EDP F  +  VI T +PGATA+E+S 
Sbjct: 4    NLSAWALQNRQIVVYLMLLLAIVGALSYSKLGQSEDPPFTFKAMVIQTQWPGATAEEMSR 63

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +VT+ IE  +    E + + S S  G S VT   +   +  S  +  +W ++R+K+ D Q
Sbjct: 64   QVTERIEKKLMETGEYERIVSFSRPGESNVTFMAR--DSMRSKDIPDLWYQIRKKIGDIQ 121

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
               PPG      ND+F   +   YA+TG GF    L+DY D ++ +L  V  V K   + 
Sbjct: 122  HTFPPGVRGPFFNDEFGTTFGNIYALTGSGFDYAILKDYADRIQLQLQRVKSVGKVELIG 181

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
             Q E I+IE+S+ ++A  G+ +E V Q L+ Q+ VT AG V+    R+ +    +  ++ 
Sbjct: 182  LQDEKIWIELSNVKLATLGVPLEAVRQALEAQNAVTAAGFVETISDRVQLRVTGSFETVK 241

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
             + +  + V       R+GD+A + RG+ +P +  MR+ G+ A+G  +S  +GG+++ +G
Sbjct: 242  QIRDFPIRVAGRT--FRIGDVAEVHRGFNDPPAPRMRFMGEPALGLAVSMKSGGDILVLG 299

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
             A++   A L+ + P GM L  +S Q  +V+  V  F+  LI A+ IV +V    +GVR+
Sbjct: 300  QALEQEFARLQQELPAGMQLRKVSDQPAAVKTGVGEFVKVLIEALVIVLLVSFFSLGVRT 359

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G+++   + L +A T   M   DI + +ISLGAL++ALG++VD+AI+  + + ++ +Q  
Sbjct: 360  GLVVALSIPLVLAMTFAAMSYLDIGLHKISLGALVLALGLMVDDAIIAVEMMAIKMEQ-- 417

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
              D+ +  S    +T +P+L GT++    F  I  + S  GEY  S+F V+  S+  SW+
Sbjct: 418  GYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIATANSSTGEYTRSIFQVVAISLIASWI 477

Query: 482  FAVTVTPMLCHDFLRVKAPTKEAKPSKLVTGY-----------KAVLQWVLSHRVVSCAM 530
             AV   P++    L   A     K      G+           + ++ + +  R     +
Sbjct: 478  AAVMFVPLIGEKLLPDLAKKTAHKHGTSSEGHDPYATPFYQRVRRLVTFCVRRRKTVILL 537

Query: 531  LLGTLVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGI 590
             L    AAV   + +P  F P S R + +VD+ L +G+ ++ TE  V  +E+ + ++ GI
Sbjct: 538  TLAIFAAAVVLFRLVPQQFFPASGRLELMVDLKLAEGASLKATEAEVRRLEELLKERAGI 597

Query: 591  TNITSFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASI 650
             N  +++G G  RF L    +    S+ Q ++  D       L   L   +   +P    
Sbjct: 598  DNYVAYVGTGSPRFYLPLDQQLPATSFAQFVVLADSIESREALRSWLIERMREDFPSLRG 657

Query: 651  KVWKFMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQP 710
            +V +   G   G  ++    G    V+R LA Q  A ++ +P++  V  DW++   +++ 
Sbjct: 658  RVTRLENGPPVGYPVQFRVTGEHIDVVRGLARQVAAKVNENPHVANVHLDWQEPSKMVRL 717

Query: 711  VYSAQEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENS 770
                  A+ LG+TT E+S  + +T  G +V  +RE N+LI +++R  E ER  E ++  S
Sbjct: 718  NVDQDRARALGVTTAELSGFLRRTFTGSSVSQFREDNELIEILLRGTERERL-ELSMLPS 776

Query: 771  EVFSAQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREK 830
                 ++GR +P+SQ V +++  +++ ++   NR+PT+ V+AD       A     +   
Sbjct: 777  LAIPTESGRSVPLSQ-VATLEYGFEEGVIWHRNRLPTVTVRADVYGEQQPAALVREIEPT 835

Query: 831  IEQI--ELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWM 888
            + +I  +LP GY L   G  + S+     +    P     ++  ++    +  +  ++++
Sbjct: 836  LAEIRDQLPGGYLLEVGGTVEDSERGQRSVNAGMPLFVIVVLTLLMAQLKSFSRSAMVFL 895

Query: 889  TAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAI 948
            TAP  ++GV + L+ F  PF F+A+LG ++L GM+++N+++LVDQ + +I AG+  + AI
Sbjct: 896  TAPLGIIGVALFLLLFGQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIGAGQARFSAI 955

Query: 949  IDAAVSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVL 1008
            ++A V R RP++L A  ++L + PL    FF  MAV IM GL+ AT LTL+ +P  YA  
Sbjct: 956  VEATVRRFRPIVLTALASVLAMIPLSRSIFFGPMAVAIMGGLIVATALTLLFLPALYAAW 1015

Query: 1009 FRVKVAKA 1016
            FRV+  +A
Sbjct: 1016 FRVREDEA 1023