Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  561 bits (1447), Expect = e-164
 Identities = 322/1013 (31%), Positives = 553/1013 (54%), Gaps = 13/1013 (1%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++R+ +   +    L+AL +I G +  L++G+ EDPEF  R  V+   +PGA+ QE+ D
Sbjct: 12   NLSRWAIGHPSIARFLLALIIITGGLGLLRMGQREDPEFTFRVMVVQAVWPGASIQEMED 71

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +V + IE  +Q    L  V+S +  G + +TV+I  E   ++ ++   + ++R+KV D  
Sbjct: 72   QVVNKIERKLQETPHLDFVRSYTRAGSAIITVQI--EGDTNADEVADAFYQVRKKVGDIA 129

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
             +LP G      ND+F D +   ++++G+GFS  +L+ +    R  L+  PGV K   L 
Sbjct: 130  NELPEGVLGPYFNDEFGDTFITLHSISGDGFSYPELKRFAIEGRDMLLATPGVEKVVVLG 189

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
            +Q E I+I++SS+ +AE GL+   +   +  Q+ V  AGSVD     + +  + +++ + 
Sbjct: 190  DQPEKIYIDLSSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSVRISVEGDVTKVE 249

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
            D+  L++  G     +RLGDIA ++ G  +P +   R+NG  ++  G+    G NV ++G
Sbjct: 250  DIRELRLRAGDRT--IRLGDIATVTSGLEDPYARKFRFNGHDSVQIGVVMAKGFNVTDVG 307

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
             AV+A     ES  P G+ +  +S Q + V  ++  F   LI A+ IV +V  L +G RS
Sbjct: 308  KAVEATYDRFESALPYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSFLSIGWRS 367

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G++I   + L +A T  +M    I +QRISLGALIIALG+LVD+A++V +  ++  + E 
Sbjct: 368  GLVIAIAIPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVE--MMERKLEE 425

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
              +K    S   ++T +P+L GT++    F  +G + S  GEY  SLF+V+  ++ +SW 
Sbjct: 426  GLEKIDAASFAYSSTAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIALVVSWF 485

Query: 482  FAVTVTPMLCHDFLRVK---APTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVAA 538
             AV  TP L +  L+ +       +   ++     +  + W + HRVV   M L   V +
Sbjct: 486  VAVYFTPWLGYMILKQRHHAGTHHDVFDTRFYRRLRTTVGWAVRHRVVVLLMTLAIFVTS 545

Query: 539  VWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFIG 598
            +W  QFIP  F P+S RP+ +VD++LP+G+ I+  E+   ++E+ +   +    I ++IG
Sbjct: 546  LWAFQFIPKNFFPQSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMDDEDKRFIATYIG 605

Query: 599  GGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFMLG 658
             G  RF L    + RNP++ QLL+   D      L+ +L+  L   +P    KV +  LG
Sbjct: 606  EGAPRFFLPLDQQLRNPNFAQLLVMAKDEPARERLIAKLRTILAEDFPSIRAKVDRLFLG 665

Query: 659  RGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQEAQ 718
               G  ++    GPD   +R++A+Q K     +P L A+ DDW + VP ++ V     A+
Sbjct: 666  PPTGWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLEPVPAMKLVIDQDRAR 725

Query: 719  RLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQAG 778
             LG+T+Q I   +   ++G  +  +R+G + + +M R P   RH   A+++  V     G
Sbjct: 726  ALGITSQRIRQMLQAAMSGVPLDSFRDGEETVSIMAREPGGNRHLLSAVQSVYV-PTDFG 784

Query: 779  RYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIE--L 836
             ++PVSQ+   V  + Q    RR +R+PTI V+     GV   D    + ++++ +   L
Sbjct: 785  GFVPVSQIAKVVPVMEQGIEWRR-DRLPTITVRGTLPDGVQPNDVAMQLFDELKGLRDGL 843

Query: 837  PAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVVG 896
              GY++   G  + S ++   +A  AP     +++ ++       + +++  T P  ++G
Sbjct: 844  APGYKVEIQGGAEDSAESQASIAAKAPIMLVVIVILLMVQLQHFGKAMLVLATGPLGIIG 903

Query: 897  VTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSRA 956
                L+    PF F+AILG ++L+G++++N+I+LVDQ D +I AG E   AII AAV R 
Sbjct: 904  AAAALLISGAPFGFVAILGVIALLGIIIRNSIILVDQIDQDIAAGMERSEAIIGAAVRRF 963

Query: 957  RPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLF 1009
            RP++L A T +L + P+    F+  +A  +M G+L AT+LT++V+P  YA+ F
Sbjct: 964  RPIILTALTAVLALIPISRGVFWGPLAYAMMGGILVATVLTILVLPAGYALFF 1016