Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1028 a.a., AcrB/AcrD/AcrF family transporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  818 bits (2113), Expect = 0.0
 Identities = 423/1019 (41%), Positives = 635/1019 (62%), Gaps = 12/1019 (1%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            M +A Y +      W+   + L+GG +++L LG+ EDP F I+ AV++T YPGAT+ EV 
Sbjct: 1    MSVAGYFVKNSVISWMFTLILLLGGSVAFLGLGQLEDPPFTIKDAVVITLYPGATSTEVE 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
            +EVT  +E A+QAL  + ++KS+S  G S++TV +K  +     QL Q+WD+LRRKV D 
Sbjct: 61   EEVTYPVEKAIQALPYVDKIKSLSTSGLSQITVTMKNTYGPD--QLPQIWDELRRKVNDM 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATL 180
               LPPGA   +VNDDF DVY +   +TG+ FS ++L+DYVD ++REL LVPGV K +  
Sbjct: 119  AASLPPGAQHPMVNDDFGDVYGIMLMITGKDFSYRELKDYVDYVKRELELVPGVGKVSLA 178

Query: 181  AEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSL 240
             EQ+E IF+EMS  + A   L    +  +L  Q++V+ AG++      + +    +  S+
Sbjct: 179  GEQKEQIFVEMSVNKAASSNLDPNLIANLLNSQNMVSDAGNIQVSGDNLKIRTSGSSRSV 238

Query: 241  ADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEM 300
             +L  L +     + ++ L D+A + RGY E  + ++ YN +RAI  GIS  +G NVV +
Sbjct: 239  EELQELIIPGTQGDKLIYLKDVATVRRGYQEIPTNVLSYNRERAINLGISFSSGVNVVAV 298

Query: 301  GDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVR 360
            G AV  +LA+++S RP G+ +  +  Q   V  SV +F+ NLIAAV IV  VLL FMGV+
Sbjct: 299  GKAVDDKLAQIDSARPAGIKIETMYNQPVEVDNSVGSFVWNLIAAVVIVIGVLLFFMGVK 358

Query: 361  SGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQE 420
            SG++IG +L LT  GT  +ML  +I +QRISLGALIIALGMLVDNAIVV +G+L+  QQ 
Sbjct: 359  SGILIGLILFLTCLGTFVLMLQAEIELQRISLGALIIALGMLVDNAIVVVEGILIGRQQ- 417

Query: 421  PNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSW 480
                  +    +V  T WPLLG TV+ I AF+ IGLSP   GE+AGSLFWV+L+S+FLSW
Sbjct: 418  -GKTTLEASDAIVKQTMWPLLGATVIAITAFAPIGLSPDSTGEFAGSLFWVLLFSLFLSW 476

Query: 481  VFAVTVTPMLCHDFL------RVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGT 534
            + A+T+TP     F       +++  TK+       T YK  L   + +R +S   ++  
Sbjct: 477  ITAITITPFFASLFFGDKGEEQLEGQTKDPYGGAFFTLYKVALDVCMRYRFISVIAVVLA 536

Query: 535  LVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNIT 594
             VA+V G  ++   F P S  P F+VDV+LP+G+DIR T+++V ++E    Q   +  + 
Sbjct: 537  FVASVVGFGYVKQSFFPPSTTPIFLVDVWLPEGTDIRETQRIVTAMEDKAAQLADVEFVA 596

Query: 595  SFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWK 654
            S +G G  RFMLTY+PE    SYGQ+ I    +  +  ++ + + E++A +P   +K  +
Sbjct: 597  STVGKGFPRFMLTYAPEKNYASYGQIAIRTSAFETLEGVMTQFRREMEAGFPQTQLKFKR 656

Query: 655  FMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSA 714
              +G     KIEA   GPD  VLR L  + +A+    P  + V+ DWR++V  + P ++ 
Sbjct: 657  LEVGPSTDAKIEARISGPDPDVLRTLGAEVQAVFAATPGTVNVRHDWRERVKYIAPRFNE 716

Query: 715  QEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFS 774
             +A+RLG+   E+  A+  +  G  +GVYREG +L+ ++ R P++ER    ++E+  ++S
Sbjct: 717  TQARRLGIVKSEVDKALKFSFAGLQIGVYREGTNLLSIVGRLPDDERVDIESMESIRIWS 776

Query: 775  AQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILV--QADPAPGVMTADAFNNVREKIE 832
                  +P+ Q+VD  +  ++D +++R +R  T+ V   AD    ++ A+ F  VR ++E
Sbjct: 777  PVLNTLVPLQQVVDGFEVKFEDPIIQRRDRKRTLTVFADADFEYDLLPAELFAKVRPQVE 836

Query: 833  QIELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPF 892
             I +P GYEL+W GE+++S+DA E L    P GF  M L  VF+FN++R+PLVIW   P 
Sbjct: 837  AISMPPGYELVWGGEFESSQDAQESLFAILPMGFLFMFLVTVFLFNSVRKPLVIWACVPL 896

Query: 893  AVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAA 952
            A++G+T+GL+    PF FMA+LG LSL GM++KN IVL+DQ + EI  GKE + A+ ++ 
Sbjct: 897  AIIGITLGLLVLDKPFSFMALLGMLSLSGMLLKNGIVLLDQINLEINEGKEPFQAVFEST 956

Query: 953  VSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRV 1011
            VSR RPV + A TTILG+ PL+ D FF+SMA  +MFGL  AT+LTL+++P+FY + F++
Sbjct: 957  VSRVRPVCMAAVTTILGMLPLITDAFFESMAAVVMFGLGVATVLTLLIVPVFYIIFFKI 1015