Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1014 a.a., integral membrane protein, AcrB/AcrD/AcrF family from Phaeobacter inhibens DSM 17395

 Score =  733 bits (1893), Expect = 0.0
 Identities = 405/1011 (40%), Positives = 595/1011 (58%), Gaps = 11/1011 (1%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            MDIAR ++ +    W+++   L GG   +L LGR EDP F I+QAV++T YPGA+A++V+
Sbjct: 1    MDIARGSINRPLYTWIIMLAALFGGIWGFLNLGRLEDPAFTIKQAVVITQYPGASAEQVA 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
             EV++ +E A+Q + E+K++ S++  G S + VE++  F    ++L  +W KLR ++ DA
Sbjct: 61   LEVSEPLESAIQKMGEVKQITSMNQPGLSRIDVEMQDTF--DGSELPALWTKLRSEIEDA 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATL 180
             R LP G     VND F DV+ +FYAVT EG++D +  +    LRREL+ V GVA     
Sbjct: 119  ARDLPEGVSTPFVNDGFGDVFGVFYAVTAEGYTDAERHELATFLRRELLAVDGVADVEIA 178

Query: 181  AEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSL 240
               +EAIF+E          + ++ V   L   + V  AG VD   ++  V       S+
Sbjct: 179  GLPEEAIFVEPKMAITVNQNIPIDAVSNALATANSVRSAGQVDNGPVQTRVSAPEGSDSV 238

Query: 241  ADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEM 300
             ++  L   +GS   V+ + D+A++ RG  +  S ++R++G  A   GI+ +   N+VE+
Sbjct: 239  TEIAGL--TIGSQGEVINIIDMADVHRGRVDDPSQIIRFDGVEAFTIGIAGLATENIVEV 296

Query: 301  GDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVR 360
            G  V ARLAEL+SQ P G++L  I  Q   V  +  +F+ NL  +V IV +VL +FMG R
Sbjct: 297  GQRVDARLAELDSQIPYGVELKPIYQQHVVVDQASNDFLVNLAMSVGIVVIVLAIFMGWR 356

Query: 361  SGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQE 420
            + +++G  LLLTV GTL  M    I M+RISLGALIIA+GMLVDNAIVV +G+ +   + 
Sbjct: 357  AAIVVGTTLLLTVVGTLMFMNFFSIEMERISLGALIIAMGMLVDNAIVVAEGMQISMAR- 415

Query: 421  PNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSW 480
                 ++   E    T+ PLLG TV+GI AF+ IGLSP   GE+  SLF VI  S+ LSW
Sbjct: 416  -GRSSREAAHEAAAKTQIPLLGATVIGIMAFAGIGLSPDSTGEFMFSLFAVIGISLLLSW 474

Query: 481  VFAVTVTPMLCHDFLRV-KAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVAAV 539
            + A+T TP+L H F +       +A    L   Y  +L+  L  R      L+   V   
Sbjct: 475  LLALTATPLLAHYFFKQGSGDDHDAYSGILFRTYSKILRLSLKLRWFVVPGLIAITVLCF 534

Query: 540  WGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFIGG 599
             G   +   F P S  P F V   LPQGS I  T + +   E+ +  ++ +  +T+F+G 
Sbjct: 535  IGFGQVKQQFFPNSNTPLFFVHYKLPQGSSITTTSEHMRVFEEWLADRNDVETVTTFVGQ 594

Query: 600  GGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFMLGR 659
            G  RFMLTY  E   PSYG L+I       I  L  +L+     ++P+   +  + + G 
Sbjct: 595  GATRFMLTYDSEDPTPSYGHLIIRATSLEAIPALQADLEVFGQGRFPEGEFRTKRLVFGP 654

Query: 660  GGGKKIEAGFKGPDSHVLRQLAEQAKA-IMHNDPNLIAVQDDWRQQVPVLQPVYSAQEAQ 718
            GGG  IE  F GPD  VLRQL E+A   +    P++++V+ DWR+Q   L+P+Y+   AQ
Sbjct: 655  GGGAPIEVRFAGPDPRVLRQLGEEAMLRLQQATPDILSVRQDWREQEITLKPIYATDRAQ 714

Query: 719  RLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQAG 778
              G+T + I+ A+  + +G   GV+RE + LIP+++R  E   ++   + +  VFS  AG
Sbjct: 715  TAGVTREAIADALQFSTDGLRAGVFRERDRLIPIVLRRAEAGEYN---LMDQLVFSEAAG 771

Query: 779  RYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIELPA 838
            +++P+ Q+V  +D V ++ L+ R +R+PT+ V AD +  +  A  F+ V++ IE+I+LPA
Sbjct: 772  KFVPLEQMVGGIDVVVENTLVHRRDRVPTLTVGADISADLTAASVFSQVQDTIEEIQLPA 831

Query: 839  GYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVVGVT 898
            GY + W GE++ S DAN  L    P     M+L  V +FNA+RQP++IW+  P +V GV 
Sbjct: 832  GYTMEWGGEHENSADANASLGKQLPVTILIMVLISVLLFNAIRQPIIIWLLVPMSVNGVV 891

Query: 899  IGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSRARP 958
            IGL+    PF F A+LG LSL GM++KN IVLV++ D     G+    AI++A+VSR RP
Sbjct: 892  IGLLGTGMPFTFTALLGLLSLSGMLIKNGIVLVEEIDLVRAEGRPLREAIVEASVSRLRP 951

Query: 959  VLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLF 1009
            V+L A TTILG+APLL D FF SMA+TIM GL FAT+LTLV  P+FY + F
Sbjct: 952  VMLAAVTTILGMAPLLTDAFFVSMAITIMGGLAFATVLTLVAAPVFYLIFF 1002