Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1020 a.a., multidrug transporter AcrB from Klebsiella michiganensis M5al

 Score =  748 bits (1931), Expect = 0.0
 Identities = 407/1014 (40%), Positives = 612/1014 (60%), Gaps = 13/1014 (1%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            MDI+R  +     VW+ I L  IGG  + L +GR EDP F I+ AV++T YPGA+AQ+V 
Sbjct: 1    MDISRQFINNPIRVWLTILLLGIGGIFALLNIGRLEDPAFTIKTAVVITHYPGASAQQVE 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
            +EVT  +E A+Q L  L  V S+S  G S++TV I   +   S++L Q+WD+LRR+V DA
Sbjct: 61   EEVTLPLENALQQLPYLDNVSSISSNGLSQITVNIASHY--HSSELPQIWDELRRRVGDA 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATL 180
             RQ PPG  +  VNDDF DV+  F+A++G+ F++ +L  Y + LRRELVLVPGV K A  
Sbjct: 119  ARQFPPGVASPFVNDDFGDVFGFFFAISGDSFTNPELVRYAEQLRRELVLVPGVGKVAIG 178

Query: 181  AEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSL 240
                + I I++S  +MA  G+++ ++  +L + ++V+ AG + +    I + P    ++L
Sbjct: 179  GAIPQQINIDISLAKMAARGITLTQLAAILSRLNVVSNAGEIKSGSESIRLHPTGEFANL 238

Query: 241  ADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEM 300
             +L +L ++   +    RL DIA +SRG +E  + +   NG++A+  G+S + G NV+++
Sbjct: 239  DELGDLLISPHGSGTATRLRDIATLSRGLSETPASIYHANGRQAVTMGVSFIPGVNVIDV 298

Query: 301  GDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVR 360
            G A++++L ++ +++P G+ + +   Q+  V  SV  FI N + A+AIV  VLL+FMGVR
Sbjct: 299  GRALESKLEQMSAEKPAGISIDLFYDQAAEVAHSVNGFITNFLMALAIVVGVLLIFMGVR 358

Query: 361  SGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQE 420
            SG+II   L L V GTL +M +  I +QRISLGALIIAL MLVDNAIV+ +GVL+  QQ 
Sbjct: 359  SGIIIALSLALNVLGTLLIMYLWGIELQRISLGALIIALSMLVDNAIVIVEGVLIARQQ- 417

Query: 421  PNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSW 480
              +     ++ V+  +  PLLG TV+ I AF+ IGLS    GEY  SLF V+L S+ LSW
Sbjct: 418  -GSTLLTAINYVIRRSALPLLGATVIAILAFAPIGLSQDSTGEYCKSLFQVLLISLMLSW 476

Query: 481  VFAVTVTPMLCHDFL--RVKAPTKEAKPS----KLVTGYKAVLQWVLSHRVVSCAMLLGT 534
              A+T+TP+L   +L      P  +A  +    +    Y+  LQ +L  + ++  ++   
Sbjct: 477  FSALTITPVLIKWWLFKNQSQPVAQANANPYGGRFYRLYQQALQALLLRKTLTLTIMAAL 536

Query: 535  LVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNIT 594
            L AA+WG   +   F P S  P F VD++LP G+DI  TE++ + IE  +  + G+    
Sbjct: 537  LAAAIWGFGSVRQNFFPSSNTPIFFVDLWLPYGTDIATTEKMTSDIETTINGQPGVVTTV 596

Query: 595  SFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWK 654
            + +G G +RF+LTYS + +  +Y Q+++ +DD   I  L   +   +   YP  +    +
Sbjct: 597  ATVGQGSMRFILTYSGQRQYSNYAQIMVRMDDQRNINALTQHVDRYIARNYPQVNASTKR 656

Query: 655  FMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSA 714
             M G  G   IE   KGPD   LR LA Q   I+  DP    V++DW+ +  V++P YS 
Sbjct: 657  VMFGPSGDSAIEVRIKGPDPDRLRLLASQVGDILSADPATDGVRNDWQNRSKVIRPQYST 716

Query: 715  QEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFS 774
               + LG+  Q+I  A+    +G   G+YREG DL+P++VR P  ER     + N  V+S
Sbjct: 717  ALGRELGVDKQDIDNALEMNFSGSRAGLYREGADLLPVVVRPPAAERQDANHLNNVLVWS 776

Query: 775  AQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAP--GVMTADAFNNVREKIE 832
                +YIP+S +V      ++D L+ R +R   + VQ DP P     + D  + V+ +I+
Sbjct: 777  QSRQQYIPLSNVVSGFHLEWEDPLILRRDRSRVLTVQTDPDPLSNQTSGDILSRVKPQID 836

Query: 833  QIELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPF 892
             I LP GY + W G+ + S +A +GL  + P G+  M +  V MF++L+  + IW+T P 
Sbjct: 837  AIALPHGYSIEWGGDAENSSEAQQGLFTTLPLGYLVMFVITVLMFSSLKNAVAIWLTVPL 896

Query: 893  AVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAA 952
            A++GVT G +    PF FMA++G LSL GM+++N IVLV++ + + +  K    AII AA
Sbjct: 897  ALIGVTPGFLLTGIPFGFMALIGLLSLSGMLIRNGIVLVEEIEQQ-KQEKGQQEAIIYAA 955

Query: 953  VSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYA 1006
             SR RP+LL AFTT+LG+APLL+D FF+SMAV IMFGL FATILTL+V+P+ YA
Sbjct: 956  TSRLRPILLTAFTTVLGLAPLLLDVFFQSMAVVIMFGLGFATILTLLVLPVIYA 1009